Evidence map›Paper›PMID 37434467›Full record

ArticleCancer medicine2023

Identification of age- and immune-related gene signatures for clinical outcome prediction in lung adenocarcinoma.

Andrew Zhou, Dalin Zhang, Xiaoman Kang, James D Brooks

Abstract read
In one paragraph

Article in Cancer medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Ageing, immune fitness and cancer.Nature reviews. Cancer · 2025
    Review
  5. Review
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Andrew ZhouDepartment of Urology, Stanford University School of Medicine, Stanford, California, USA.
Dalin ZhangDepartment of Urology, Stanford University School of Medicine, Stanford, California, USA.
Xiaoman KangDepartment of Oncology, Stanford University School of Medicine, Stanford, California, USA.
James D BrooksDepartment of Urology, Stanford University School of Medicine, Stanford, California, USA.

Funding

Stanford Molecular and Cellular Characterization LaboratoryU01CA196387 · NCI · STANFORD UNIVERSITY · PI BROOKS, JAMES D. · 2015 to 2020
$5.2M
Identification of serum protein biomarkers by profiling N-glycoproteomes of patient-derived xenografts of clear cell renal cell carcinomaR21CA256271 · NCI · STANFORD UNIVERSITY · PI BROOKS, JAMES D., PITTERI, SHARON · 2021 to 2021
$406k
Identification of serum protein biomarkers by profiling N-glycoproteomes of patient-derived xenografts of neuroendocrine prostate cancerR21CA276896 · NCI · STANFORD UNIVERSITY · PI BROOKS, JAMES D., PITTERI, SHARON · 2023 to 2024
$390k
NCI NIH HHS R21 CA256271NCI NIH HHS R21 CA276896NCI NIH HHS U01 CA196387
6 · The paper itself

Abstract

backgroundThe understanding of the factors causing decreased overall survival (OS) in older patients compared to younger patients in lung adenocarcinoma (LUAD) remains.

methodsGene expression profiles of LUAD were obtained from publicly available databases by Kaplan-Meier analysis was performed to determine whether age was associated with patient OS. The immune cell composition in the tumor microenvironment (TME) was evaluated using CIBERSORT. The fraction of stromal and immune cells in tumor samples were also using assessed using multiple tools including ESTIMATE, EPIC, and TIMER. Differentially expressed genes (DEGs) from the RNA-Seq data that were associated with age and immune cell composition were identified using the R package DEGseq. A 22-gene signature composed of DEGs associated with age and immune cell composition that predicted OS were constructed using Least Absolute Shrinkage and Selection Operator (LASSO).

resultsIn The Cancer Genome Atlas (TCGA)-LUAD dataset, we found that younger patients (≤70) had a significant better OS compared to older patients (>70). In addition, older patients had significantly higher expression of immune checkpoint proteins including inhibitory T cell receptors and their ligands. Moreover, analyses using multiple bioinformatics tools showed increased immune infiltration, including CD4+ T cells, in older patients compared to younger patients. We identified a panel of genes differentially expressed between patients >70 years compared to those ≤70 years, as well as between patients with high or low immune scores and selected 84 common genes to construct a prognostic gene signature. A risk score calculated based on 22 genes selected by LASSO predicted 1, 3, and 5-year OS, with an area under the curve (AUC) of 0.72, 0.72, 0.69, receptively, in TCGA-LUAD dataset and an independent validation dataset available from the European Genome-phenome Archive (EGA).

conclusionOur results demonstrate that age contributes to OS of LUAD patients atleast in part through its association with immune infiltration in the TME.

Indexed as

Adenocarcinoma of LungLung NeoplasmsAgedArea Under CurveCD4-Positive T-LymphocytesComputational BiologyHumansPrognosisTumor Microenvironmentageimmune infiltrationlung adenocarcinomaoverall survivaltumor microenvironment

Identifiers

PMID37434467
PMCPMC10501266

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