Evidence map›Paper›PMID 37433650›Full record

ArticleRNA (New York, N.Y.)2023

The DUF3715 domain has a conserved role in RNA-directed transposon silencing.

Theresa Schöpp, Daniil M Prigozhin, Christopher Douse, Keisuke Kaji, Atlanta G Cook, Dónal O'Carroll

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Theresa SchöppCentre for Regenerative Medicine, Institute for Regeneration and Repair, University of Edinburgh, Edinburgh EH16 4UU, United Kingdom.
Daniil M PrigozhinBerkeley Center for Structural Biology, Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.ORCID 0000-0003-2075-0231
Christopher DouseLab of Epigenetics and Chromatin Dynamics, Department of Experimental Medical Science and Lund Stem Cell Center, Lund University, 221 84 Lund, Sweden.
Keisuke KajiCentre for Regenerative Medicine, Institute for Regeneration and Repair, University of Edinburgh, Edinburgh EH16 4UU, United Kingdom.
Atlanta G CookWellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom.ORCID 0000-0003-2087-9772
Dónal O'CarrollCentre for Regenerative Medicine, Institute for Regeneration and Repair, University of Edinburgh, Edinburgh EH16 4UU, United Kingdom donal.ocarroll@ed.ac.uk.
MRC Centre for Regenerative Medicine · GBLawrence Berkeley National Laboratory · USLund University · SEWellcome Centre for Cell Biology · GB

Funding

Wellcome Trust 106144Wellcome Trust 200898/Z/16/Z
6 · The paper itself

Abstract

RNA-directed transposon silencing operates in the mammalian soma and germline to safeguard genomic integrity. The piRNA pathway and the HUSH complex identify active transposons through recognition of their nascent transcripts, but mechanistic understanding of how these distinct pathways evolved is lacking. TASOR is an essential component of the HUSH complex. TASOR's DUF3715 domain adopts a pseudo-PARP structure and is required for transposon silencing in a manner independent of complex assembly. TEX15, an essential piRNA pathway factor, also contains the DUF3715 domain. Here, we show that TASOR's and TEX15's DUF3715 domain share extensive structural homology. We found that the DUF3715 domain arose in early eukaryotes and that in vertebrates it is restricted to TEX15, TASOR, and TASORB orthologs. While TASOR-like proteins are found throughout metazoa, TEX15 is vertebrate-specific. The branching of TEX15 and the TASOR-like DUF3715 domain likely occurred in early metazoan evolution. Remarkably, despite this vast evolutionary distance, the DUF3715 domain from divergent TEX15 sequences can functionally substitute the DUF3715 domain of TASOR and mediates transposon silencing. We have thus termed this domain of unknown function as the RNA-directed pseudo-PARP transposon silencing (RDTS) domain. In summary, we show an unexpected functional link between these critical transposon silencing pathways.

Indexed as

Drosophila ProteinsPoly(ADP-ribose) Polymerase InhibitorsAnimalsArgonaute ProteinsDNA Transposable ElementsDrosophila melanogasterGenomeMammalsPiwi-Interacting RNARNA InterferenceRNA, Small InterferingArgonaute ProteinsDNA Transposable ElementsDrosophila ProteinsPiwi-Interacting RNAPoly(ADP-ribose) Polymerase InhibitorsRNA, Small InterferingDUF3715 domain and germlineHUSH complexpiRNA pathwaytransposon silencing

Identifiers

PMID37433650
PMCPMC10578480
OpenAlexW4383903892

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.