Evidence map›Paper›PMID 37432651›Full record

ArticleJournal of experimental botany2023

From root to shoot: quantifying nematode tolerance in Arabidopsis thaliana by high-throughput phenotyping of plant development.

Jaap-Jan Willig, Devon Sonneveld, Joris J M van Steenbrugge, Laurens Deurhof, Casper C van Schaik, Misghina G Teklu, Aska Goverse, Jose L Lozano-Torres, Geert Smant, Mark G Sterken

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Jaap-Jan WilligLaboratory of Nematology, Wageningen University & Research, 6708PB Wageningen, The Netherlands.ORCID 0000-0003-1872-1300
Devon SonneveldLaboratory of Nematology, Wageningen University & Research, 6708PB Wageningen, The Netherlands.
Joris J M van SteenbruggeLaboratory of Nematology, Wageningen University & Research, 6708PB Wageningen, The Netherlands.ORCID 0000-0002-9961-2538
Laurens DeurhofLaboratory of Phytopathology, Wageningen University & Research, 6708PB Wageningen, The Netherlands.ORCID 0000-0002-6491-6726
Casper C van SchaikLaboratory of Nematology, Wageningen University & Research, 6708PB Wageningen, The Netherlands.
Misghina G TekluAgrosystems Research, Wageningen University & Research, 6708PB Wageningen, The Netherlands.ORCID 0000-0002-1686-1089
Aska GoverseLaboratory of Nematology, Wageningen University & Research, 6708PB Wageningen, The Netherlands.ORCID 0000-0002-7399-8743
Jose L Lozano-TorresLaboratory of Nematology, Wageningen University & Research, 6708PB Wageningen, The Netherlands.ORCID 0000-0002-0021-5947
Geert SmantLaboratory of Nematology, Wageningen University & Research, 6708PB Wageningen, The Netherlands.ORCID 0000-0001-6094-8686
Mark G SterkenLaboratory of Nematology, Wageningen University & Research, 6708PB Wageningen, The Netherlands.ORCID 0000-0001-7119-6213
Wageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nematode migration, feeding site formation, withdrawal of plant assimilates, and activation of plant defence responses have a significant impact on plant growth and development. Plants display intraspecific variation in tolerance limits for root-feeding nematodes. Although disease tolerance has been recognized as a distinct trait in biotic interactions of mainly crops, we lack mechanistic insights. Progress is hampered by difficulties in quantification and laborious screening methods. We turned to the model plant Arabidopsis thaliana, since it offers extensive resources to study the molecular and cellular mechanisms underlying nematode-plant interactions. Through imaging of tolerance-related parameters, the green canopy area was identified as an accessible and robust measure for assessing damage due to cyst nematode infection. Subsequently, a high-throughput phenotyping platform simultaneously measuring the green canopy area growth of 960 A. thaliana plants was developed. This platform can accurately measure cyst nematode and root-knot nematode tolerance limits in A. thaliana through classical modelling approaches. Furthermore, real-time monitoring provided data for a novel view of tolerance, identifying a compensatory growth response. These findings show that our phenotyping platform will enable a new mechanistic understanding of tolerance to below-ground biotic stress.

Indexed as

ArabidopsisArabidopsis ProteinsNematodaTylenchoideaAnimalsPlant DevelopmentPlant DiseasesPlant RootsArabidopsis ProteinsArabidopsis thalianabiotic stressgrowth rate analysisHeterodera schachtiihigh-throughput phenotypingMeloidogyne incognitaroot-parasitic nematodestolerance

Identifiers

PMID37432651
PMCPMC10540735
OpenAlexW4383872228

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.