Evidence map›Paper›PMID 37429851›Full record

ArticleNature communications2023

Transmission of SARS-CoV-2 in free-ranging white-tailed deer in the United States.

Aijing Feng, Sarah Bevins, Jeff Chandler, Thomas J DeLiberto, Ria Ghai, Kristina Lantz, Julianna Lenoch, Adam Retchless, Susan Shriner, Cynthia Y Tang and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed, 1 pooled it
20.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 1 synthesis or guideline pooled it, 104 citations in OpenAlex.

  1. Pooled it
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  11. Spike destabilization attenuates Mink Cluster 5 SARS-CoV-2.Proceedings of the National Academy of Sciences of the United States of America · 2026
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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Aijing FengCenter for Influenza and Emerging Infectious Diseases, University of Missouri, Columbia, MO, USA.ORCID http://orcid.org/0000-0003-3294-0737
Sarah BevinsUSDA APHIS Wildlife Services National Wildlife Disease Program, Fort Collins, CO, USA.ORCID http://orcid.org/0000-0002-4999-6836
Jeff ChandlerNational Wildlife Research Center, Wildlife Services, Animal and Plant Health Inspection Service, US Department of Agriculture, Fort Collins, CO, USA.
Thomas J DeLibertoUSDA APHIS Wildlife Services, Fort Collins, CO, USA. thomas.j.deLiberto@usda.gov.ORCID http://orcid.org/0000-0003-1115-1472
Ria GhaiOne Health Office, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Kristina LantzNational Veterinary Services Laboratories, Animal and Plant Health Inspection Service, United States Department of Agriculture, Ames, IA, USA.
Julianna LenochUSDA APHIS Wildlife Services National Wildlife Disease Program, Fort Collins, CO, USA.
Adam RetchlessNational Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Susan ShrinerNational Wildlife Research Center, Wildlife Services, Animal and Plant Health Inspection Service, US Department of Agriculture, Fort Collins, CO, USA.ORCID http://orcid.org/0000-0003-0349-7182
Cynthia Y TangCenter for Influenza and Emerging Infectious Diseases, University of Missouri, Columbia, MO, USA.ORCID http://orcid.org/0000-0001-5272-7170
Suxiang Sue TongNational Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Mia TorchettiNational Veterinary Services Laboratories, Animal and Plant Health Inspection Service, United States Department of Agriculture, Ames, IA, USA.
Anna UeharaNational Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Xiu-Feng WanCenter for Influenza and Emerging Infectious Diseases, University of Missouri, Columbia, MO, USA. wanx@missouri.edu.ORCID http://orcid.org/0000-0003-2629-9234
Animal and Plant Health Inspection Service · USCenters for Disease Control and Prevention · USUniversity of Missouri · USMissouri College · US

Funding

Evolution, transmission, and clinical impacts of SARS-CoV-2 variants among urban and rural populationsF30AI172230 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI TANG, CYNTHIA Y · 2022 to 2023
$65k
NIAID NIH HHS F30 AI172230
6 · The paper itself

Abstract

SARS-CoV-2 is a zoonotic virus with documented bi-directional transmission between people and animals. Transmission of SARS-CoV-2 from humans to free-ranging white-tailed deer (Odocoileus virginianus) poses a unique public health risk due to the potential for reservoir establishment where variants may persist and evolve. We collected 8,830 respiratory samples from free-ranging white-tailed deer across Washington, D.C. and 26 states in the United States between November 2021 and April 2022. We obtained 391 sequences and identified 34 Pango lineages including the Alpha, Gamma, Delta, and Omicron variants. Evolutionary analyses showed these white-tailed deer viruses originated from at least 109 independent spillovers from humans, which resulted in 39 cases of subsequent local deer-to-deer transmission and three cases of potential spillover from white-tailed deer back to humans. Viruses repeatedly adapted to white-tailed deer with recurring amino acid substitutions across spike and other proteins. Overall, our findings suggest that multiple SARS-CoV-2 lineages were introduced, became enzootic, and co-circulated in white-tailed deer.

Indexed as

COVID-19DeerAnimalsHumansSARS-CoV-2Washington

Identifiers

PMID37429851
PMCPMC10333304
OpenAlexW4383815305

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.