Evidence map›Paper›PMID 37427335›Full record

ArticleJournal of biomedical optics2023

Ensemble and single-particle level fluorescent fine-tuning of carbon dots via positional changes of amines toward "supervised" oral microbiome sensing.

Fatemeh Ostadhossein, Parikshit Moitra, Maha Alafeef, Dinabandhu Sar, Shannon D'Souza, Lily F Benig, Michael Nelappana, Xuedong Huang, Julio Soares, Kai Zhang and 1 more

Abstract read
In one paragraph

Article in Journal of biomedical optics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Fatemeh OstadhosseinUniversity of Illinois at Urbana-Champaign, Department of Bioengineering, Urbana, Illinois, United States.
Parikshit MoitraThe Pennsylvania State University, Department of Nuclear Engineering, State College, Pennsylvania, United States.ORCID 0000-0002-7679-7859
Maha AlafeefUniversity of Illinois at Urbana-Champaign, Department of Bioengineering, Urbana, Illinois, United States.
Dinabandhu SarUniversity of Illinois at Urbana-Champaign, Department of Bioengineering, Urbana, Illinois, United States.ORCID 0000-0003-2696-7984
Shannon D'SouzaUniversity of Illinois at Urbana-Champaign, Department of Bioengineering, Urbana, Illinois, United States.
Lily F BenigUniversity of Illinois at Urbana-Champaign, Department of Bioengineering, Urbana, Illinois, United States.
Michael NelappanaUniversity of Illinois at Urbana-Champaign, Department of Bioengineering, Urbana, Illinois, United States.
Xuedong HuangFudan University, Department of Chemistry, Shanghai, China.
Julio SoaresUniversity of Illinois at Urbana-Champaign, Frederick Seitz Materials Research Laboratory, Urbana, Illinois, United States.
Kai ZhangUniversity of Illinois at Urbana-Champaign, School of Molecular and Cellular Biology, Department of Biochemistry, Urbana, Illinois, United States.
Dipanjan PanUniversity of Illinois at Urbana-Champaign, Department of Bioengineering, Urbana, Illinois, United States.ORCID 0000-0003-0175-4704

Funding

Precise regulation of native transcription factor at the single-cell levelR01GM132438 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ZHANG, KAI · 2019 to 2022
$1.4M
NIGMS NIH HHS R01 GM132438
6 · The paper itself

Abstract

Significance: Carbon dots (CDs) have attracted a host of research interest in recent years mainly due to their unique photoluminescence (PL) properties that make them applicable in various biomedical areas, such as imaging and image-guided therapy. However, the real mechanism underneath the PL is a subject of wide controversy and can be investigated from various angles. Aim: Our work investigates the effect of the isomeric nitrogen position as the precursor in the synthesis of CDs by shedding light on their photophysical properties on the single particles and ensemble level. Approach: To this end, we adopted five isomers of diaminopyridine (DAP) and urea as the precursors and obtained CDs during a hydrothermal process. The various photophysical properties were further investigated in depth by mass spectroscopy. CD molecular frontier orbital analyses aided us in justifying the fluorescence emission profile on the bulk level as well as the charge transfer processes. As a result of the varying fluorescent responses, we indicate that these particles can be utilized for machine learning (ML)-driven sensitive detection of oral microbiota. The sensing results were further supported by density functional theoretical calculations and docking studies. Results: The generating isomers have a significant effect on the overall photophysical properties at the bulk/ensembled level. On the single-particle level, although some of the photophysical properties such as average intensity remained the same, the overall differences in brightness, photo-blinking frequency, and bleaching time between the five samples were conceived. The various photophysical properties could be explained based on the different chromophores formed during the synthesis. Overall, an array of CDs was demonstrated herein to achieve Conclusions: We have indicated that the PL properties of CDs can be regulated by the precursors' isomeric position of nitrogen. We emancipated this difference in a rapid method relying on ML algorithms to segregate the dental bacterial species as biosensors.

Indexed as

Fluorescent DyesQuantum DotsAminesCarbonNitrogenOptical ImagingAminesCarbonFluorescent DyesNitrogenbacterial sensingcarbon dotsdental biofilmfluorescencemachine learningpositional isomerssingle-particle imaging

Identifiers

PMID37427335
PMCPMC10324603

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.