Evidence map›Paper›PMID 37426985›Full record

ArticleFrontiers in plant science2023

Transcriptomic and co-expression network analyses on diverse wheat landraces identifies candidate master regulators of the response to early drought.

Liam J Barratt, Isaac J Reynolds, Sara Franco Ortega, Andrea L Harper

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Liam J BarrattCentre for Novel Agricultural Products (CNAP), Department of Biology, University of York, York, United Kingdom.
Isaac J ReynoldsCentre for Novel Agricultural Products (CNAP), Department of Biology, University of York, York, United Kingdom.
Sara Franco OrtegaCentre for Novel Agricultural Products (CNAP), Department of Biology, University of York, York, United Kingdom.
Andrea L HarperCentre for Novel Agricultural Products (CNAP), Department of Biology, University of York, York, United Kingdom.
University of York · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Over four billion people around the world rely on bread wheat ( Methods: Here, we utilized the YoGI landrace panel to identify 10,199 genes which were differentially expressed under early drought stress, before weighted gene co-expression network analysis (WGCNA) was used to construct a co-expression network and identify hub genes in modules particularly associated with the early drought response. Results: Of these hub genes, two stood out as novel candidate master regulators of the early drought response - one as an activator ( Discussion: As well as appearing to coordinate the transcriptional early drought response, we propose that these hub genes may be able to regulate the physiological early drought response due to potential control over the expression of members of gene families well-known for their involvement in the drought response in many plant species, namely dehydrins and aquaporins, as well as other genes seemingly involved in key processes such as, stomatal opening, stomatal closing, stomatal morphogenesis and stress hormone signalling.

Indexed as

droughthub genelandracenetwork analysistranscriptomicstriticum aestivum (bread wheat)

Identifiers

PMID37426985
PMCPMC10326901
OpenAlexW4381996962

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.