Evidence map›Paper›PMID 37426452›Full record

ArticleArXiv2023

A Comparison of Neuroelectrophysiology Databases.

Priyanka Subash, Alex Gray, Misque Boswell, Samantha L Cohen, Rachael Garner, Sana Salehi, Calvary Fisher, Samuel Hobel, Satrajit Ghosh, Yaroslav Halchenko and 15 more

Abstract readPreprint
PubMed Full text at PMC
In one paragraph

Article in ArXiv, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors.

Priyanka SubashLaboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.
Alex GrayLaboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.
Misque BoswellLaboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.
Samantha L CohenLaboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.
Rachael GarnerLaboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.
Sana SalehiLaboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.
Calvary FisherLaboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.
Samuel HobelLaboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.
Satrajit GhoshMcGovern Institute for Brain Research, MIT Brain and Cognitive Sciences, 77 Massachusetts Avenue, Cambridge MA 02139.
Yaroslav HalchenkoDepartment of Psychological & Brain Sciences, Center for Cognitive Neuroscience, Dartmouth Brain Imaging Center, Dartmouth College, 6207 Moore Hall, Hanover NH 03755.
Benjamin DichterCatalystNeuro, Benicia CA 94510.
Russell A PoldrackDepartment of Psychology, Stanford University, 450 Jane Stanford Way, Stanford CA 94305.
Chris MarkiewiczDepartment of Psychology, Stanford University, 450 Jane Stanford Way, Stanford CA 94305.
Dora HermesMayo Clinic, Department of Physiology & Biomedical Engineering, 200 1st Street SW, Rochester MN 55905.
Arnaud DelormeSwartz Center of Computational Neuroscience, INC, University of California San Diego, La Jolla CA 92093.
Scott MakeigSwartz Center of Computational Neuroscience, INC, University of California San Diego, La Jolla CA 92093.
Brendan BehanOntario Brain Institute, 1 Richmond Street West, Toronto ON M5H 3W4, Canada.
Alana SparksIndoc Research, Toronto ON, Canada.
Stephen R ArnottRotman Research Institute, Toronto ON, Canada.
Zhengjia WangDepartment of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia PA 19104.
John MagnottiDepartment of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia PA 19104.
Michael S BeauchampDepartment of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia PA 19104.
Nader PouratianDepartment of Neurological Surgery, University of Texas Southwestern Medical Center, 5303 Harry Hines Blvd, Dallas TX 75390.
Arthur W TogaLaboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.
Dominique DuncanLaboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.

Funding

OpenNeuro: An open archive for analysis and sharing of BRAIN Initiative dataR24MH117179 · NIMH · STANFORD UNIVERSITY · PI Russell A Poldrack · 2018 to 2026
$11.6M
DANDI: Distributed Archives for Neurophysiology Data IntegrationR24MH117295 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Satrajit Sujit Ghosh, Yaroslav O Halchenko · 2019 to 2026
$11.6M
Data Archive for the Brain Initiative (DABI)R24MH114796 · NIMH · UNIVERSITY OF SOUTHERN CALIFORNIA · PI DUNCAN, DOMINIQUE, POURATIAN, NADER · 2018 to 2023
$6.2M
BRAIN INITIATIVE RESOURCE: DEVELOPMENT OF A HUMAN NEUROELECTROMAGNETIC DATA ARCHIVE AND TOOLS RESOURCE (NEMAR)R24MH120037 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Arnaud Delorme, Amitava Majumdar · 2019 to 2026
$5.5M
Development and validation of empirical models of the neuronal population activity underlying non-invasive human brain measurementsR01MH111417 · NIMH · UNIVERSITY MEDICAL CENTER UTRECHT · PI DEVINSKY, ORRIN, DIJKHUIZEN, RICK M · 2016 to 2020
$4.4M
ATTENTION, ORIENTATION, & THE HUMAN PREFRONTAL CORTEXR37NS021135 · NINDS · UNIVERSITY OF CALIFORNIA BERKELEY · PI KNIGHT, ROBERT THOMAS · 2013 to 2019
$3.6M
NWB:N: A Data Standard and Software Ecosystem for NeurophysiologyR24MH116922 · NIMH · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI NG, LYDIA LUP-MING, RUEBEL, OLIVER · 2018 to 2019
$2.1M
RAVE: A New Open Software Tool for Analysis and Visualization of Electrocorticography DataR24MH117529 · NIMH · BAYLOR COLLEGE OF MEDICINE · PI SHETH, SAMEER ANIL · 2018 to 2020
$718k
NIMH NIH HHS R01 MH111417NIMH NIH HHS R24 MH114796NIMH NIH HHS R24 MH116922NIMH NIH HHS R24 MH117179NIMH NIH HHS R24 MH117295NIMH NIH HHS R24 MH117529NIMH NIH HHS R24 MH120037NINDS NIH HHS R37 NS021135
6 · The paper itself

Abstract

As data sharing has become more prevalent, three pillars - archives, standards, and analysis tools - have emerged as critical components in facilitating effective data sharing and collaboration. This paper compares four freely available intracranial neuroelectrophysiology data repositories: Data Archive for the BRAIN Initiative (DABI), Distributed Archives for Neurophysiology Data Integration (DANDI), OpenNeuro, and Brain-CODE. The aim of this review is to describe archives that provide researchers with tools to store, share, and reanalyze both human and non-human neurophysiology data based on criteria that are of interest to the neuroscientific community. The Brain Imaging Data Structure (BIDS) and Neurodata Without Borders (NWB) are utilized by these archives to make data more accessible to researchers by implementing a common standard. As the necessity for integrating large-scale analysis into data repository platforms continues to grow within the neuroscientific community, this article will highlight the various analytical and customizable tools developed within the chosen archives that may advance the field of neuroinformatics.

Identifiers

PMID37426452
PMCPMC10327244

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.