Evidence map›Paper›PMID 37425649›Full record

ArticleGastro hep advances2023

Transcriptional Profile of Human Pancreatic Acinar Ductal Metaplasia.

Jinmai Jiang, Hesamedin Hakimjavadi, Julie K Bray, Corey Perkins, Alyssa Gosling, Lais daSilva, Gamze Bulut, Jamel Ali, V Wendy Setiawan, Martha Campbell-Thompson and 2 more

Open access · goldAbstract read
In one paragraph

Article in Gastro hep advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Florida-California Cancer Research, Education and Engagement (CaRECancer control : journal of the Moffitt Cancer Center
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Jinmai JiangDepartment of Pharmaceutics, College of Pharmacy University of Florida, Gainesville, Florida.
Hesamedin HakimjavadiDepartment of Pathology, Immunology, and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, Florida.
Julie K BrayDepartment of Pathology, Immunology, and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, Florida.
Corey PerkinsDepartment of Pharmaceutics, College of Pharmacy University of Florida, Gainesville, Florida.
Alyssa GoslingDepartment of Pharmaceutics, College of Pharmacy University of Florida, Gainesville, Florida.
Lais daSilvaDepartment of Pharmaceutics, College of Pharmacy University of Florida, Gainesville, Florida.
Gamze BulutDepartment of Pharmaceutics, College of Pharmacy University of Florida, Gainesville, Florida.
Jamel AliDepartment of Chemical and Biomedical Engineering, FAMU-FSU College of Engineering, Tallahassee, Florida.
V Wendy SetiawanDepartment of Epidemiology, Keck School of Medicine, University of Southern California, Los Angeles, California.
Martha Campbell-ThompsonDepartment of Pathology, Immunology, and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, Florida.
Srikar ChamalaDepartment of Pathology, Immunology, and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, Florida.
Thomas D SchmittgenDepartment of Pharmaceutics, College of Pharmacy University of Florida, Gainesville, Florida.
American Association of Colleges of Pharmacy · USUniversity of Florida Health · USFlorida A&M University - Florida State University College of Engineering · USUniversity of Florida · USUniversity of Southern California · US

Funding

The Human Islet Distribution Coordinating Center (UC4)UC4DK098085 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI EVANS-MOLINA, CARMELLA, NILAND, JOYCE CAROL · 2012 to 2017
$25.6M
Tissue Modeling & Drug Development Shared Resources CoreU54CA233444 · NCI · UNIVERSITY OF FLORIDA · PI Chanita A. Hughes-Halbert, Tianze Jiao · 2018 to 2026
$12.1M
Tissue Modeling CoreU54CA233465 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Bodour Salhia · 2018 to 2026
$11.9M
Tissue Modeling CoreU54CA233396 · NCI · FLORIDA AGRICULTURAL AND MECHANICAL UNIV · PI Bereket - Mochona · 2018 to 2026
$9.8M
Novel Targeted Anticancer Agents from Marine CyanobacteriaR01CA172310 · NCI · UNIVERSITY OF FLORIDA · PI HENDRIK LUESCH · 2013 to 2026
$5.8M
Understanding pancreatic endocrine and exocrine loss in pre-type 1 diabetesR01DK123329 · NIDDK · UNIVERSITY OF FLORIDA · PI CAMPBELL-THOMPSON, MARTHA, HALLER, MICHAEL JAMES · 2020 to 2024
$2.6M
The Novel Role of REST in the Development of Pancreatic Ductal AdenocarcinomaF31CA220937 · NCI · UNIVERSITY OF FLORIDA · PI BRAY, JULIE · 2017 to 2019
$99k
NCI NIH HHS F31 CA220937NCI NIH HHS R01 CA172310NCI NIH HHS U54 CA233396NCI NIH HHS U54 CA233444NCI NIH HHS U54 CA233465NIDDK NIH HHS R01 DK123329NIDDK NIH HHS UC4 DK098085
6 · The paper itself

Abstract

BACKGROUND AND

aimsAberrant acinar to ductal metaplasia (ADM), one of the earliest events involved in exocrine pancreatic cancer development, is typically studied using pancreata from genetically engineered mouse models.

methodsWe used primary, human pancreatic acinar cells from organ donors to evaluate the transcriptional and pathway profiles during the course of ADM.

resultsFollowing 6 days of three-dimensional culture on Matrigel, acinar cells underwent morphological and molecular changes indicative of ADM. mRNA from 14 donors' paired cells (day 0, acinar phenotype and day 6, ductal phenotype) was subjected to whole transcriptome sequencing. Acinar cell specific genes were significantly downregulated in the samples from the day 6 cultures while ductal cell-specific genes were upregulated. Several regulons of ADM were identified including transcription factors with reduced activity (PTF1A, RBPJL, and BHLHA15) and those ductal and progenitor transcription factors with increased activity (HNF1B, SOX11, and SOX4). Cells with the ductal phenotype contained higher expression of genes increased in pancreatic cancer while cells with an acinar phenotype had lower expression of cancer-associated genes.

conclusionOur findings support the relevancy of human in vitro models to study pancreas cancer pathogenesis and exocrine cell plasticity.

Indexed as

Acinar ductal metaplasiaOrganoidPancreasPancreatic cancer

Identifiers

PMID37425649
PMCPMC10328139
OpenAlexW4319601661

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.