Evidence map›Paper›PMID 37424514›Full record

ArticleEMBO reports2023

RNA polymerase II CTD is dispensable for transcription and required for termination in human cells.

Yousra Yahia, Alexia Pigeot, Amal Zine El Aabidine, Nilay Shah, Nezih Karasu, Ignasi Forné, Stefan Krebs, Helmut Blum, Cyril Esnault, Tom Sexton and 3 more

Abstract read
In one paragraph

Article in EMBO reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. A novel nonsense mutation inFrontiers in genetics · 2025
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Yousra Yahia *Institut de Génétique Moléculaire de Montpellier (IGMM), CNRS-UMR5535, Montpellier, France.ORCID 0009-0001-1355-8471
Alexia Pigeot *Institut de Génétique Moléculaire de Montpellier (IGMM), CNRS-UMR5535, Montpellier, France.ORCID 0000-0002-3886-0941
Amal Zine El Aabidine *Institut de Génétique Moléculaire de Montpellier (IGMM), CNRS-UMR5535, Montpellier, France.
Nilay ShahDepartment of Molecular Epigenetics, Helmholtz Center Munich, Center of Integrated Protein Science Munich, Munich, Germany.
Nezih KarasuInstitut de Génétique Moléculaire de Montpellier (IGMM), CNRS-UMR5535, Montpellier, France.ORCID 0000-0003-3568-3705
Ignasi FornéBiomedical Center Munich, ZFP, Martinsried, Germany.ORCID 0000-0003-0309-907X
Stefan KrebsLaboratory for Functional Genome Analysis, Gene Center, Ludwig-Maximilians-Universität, Munich, Germany.
Helmut BlumLaboratory for Functional Genome Analysis, Gene Center, Ludwig-Maximilians-Universität, Munich, Germany.ORCID 0000-0002-3994-2332
Cyril EsnaultInstitut de Génétique Moléculaire de Montpellier (IGMM), CNRS-UMR5535, Montpellier, France.ORCID 0000-0002-7358-8760
Tom SextonInstitute of Genetics and Molecular and Cellular Biology (IGBMC), Illkirch, France.
Axel ImhofBiomedical Center Munich, ZFP, Martinsried, Germany.ORCID 0000-0003-2993-8249
Dirk EickDepartment of Molecular Epigenetics, Helmholtz Center Munich, Center of Integrated Protein Science Munich, Munich, Germany.
Jean-Christophe AndrauInstitut de Génétique Moléculaire de Montpellier (IGMM), CNRS-UMR5535, Montpellier, France.ORCID 0000-0003-0203-8507

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The largest subunit of RNA polymerase (Pol) II harbors an evolutionarily conserved C-terminal domain (CTD), composed of heptapeptide repeats, central to the transcriptional process. Here, we analyze the transcriptional phenotypes of a CTD-Δ5 mutant that carries a large CTD truncation in human cells. Our data show that this mutant can transcribe genes in living cells but displays a pervasive phenotype with impaired termination, similar to but more severe than previously characterized mutations of CTD tyrosine residues. The CTD-Δ5 mutant does not interact with the Mediator and Integrator complexes involved in the activation of transcription and processing of RNAs. Examination of long-distance interactions and CTCF-binding patterns in CTD-Δ5 mutant cells reveals no changes in TAD domains or borders. Our data demonstrate that the CTD is largely dispensable for the act of transcription in living cells. We propose a model in which CTD-depleted Pol II has a lower entry rate onto DNA but becomes pervasive once engaged in transcription, resulting in a defect in termination.

Indexed as

RNA Polymerase IITranscription, GeneticCell NucleusHumansMutationPhosphorylationRNA Polymerase IIcarboxy-terminal domain (CTD)mammalian transcriptionPol II interactomeRNA polymerase II (Pol II)termination

Identifiers

PMID37424514
PMCPMC10481650

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.