Evidence map›Paper›PMID 37424369›Full record

ArticleExpert opinion on drug discovery

MEDIATE - Molecular DockIng at homE: Turning collaborative simulations into therapeutic solutions.

Giulio Vistoli, Candida Manelfi, Carmine Talarico, Anna Fava, Arieh Warshel, Igor V Tetko, Rossen Apostolov, Yang Ye, Chiara Latini, Federico Ficarelli and 14 more

Abstract read
In one paragraph

Article in Expert opinion on drug discovery. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Giulio VistoliDipartimento di Scienze Farmaceutiche, Università Degli Studi di Milano, Milano, Italy.
Candida ManelfiEXSCALATE, Dompé Farmaceutici S.p.A, Napoli, Italy.
Carmine TalaricoEXSCALATE, Dompé Farmaceutici S.p.A, Napoli, Italy.
Anna FavaEXSCALATE, Dompé Farmaceutici S.p.A, Napoli, Italy.
Arieh WarshelDepartment of Chemistry, University of Southern California, Los Angeles, USA.
Igor V TetkoBIGCHEM GmbH, Valerystr, Germany.
Rossen ApostolovPDC Center For High Performance Computing, KTH Royal Institute of Technology, Stockholm, Sweden.
Yang YeNatural Products Chemistry Research Center, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China.
Chiara LatiniHigh Performance Computing Dept, CINECA, Casalecchio di Reno, Bologna, Italy.
Federico FicarelliHigh Performance Computing Dept, CINECA, Casalecchio di Reno, Bologna, Italy.
Gianluca PalermoDEIB - Politecnico di Milano, Milano, Italy.ORCID 0000-0001-7955-8012
Davide GadioliDEIB - Politecnico di Milano, Milano, Italy.
Emanuele VitaliDEIB - Politecnico di Milano, Milano, Italy.
Gaetano VarrialeSAS Institute Srl, Roma, Italy.
Vincenzo PisapiaSAS Institute Srl, Roma, Italy.
Marco ScaturroSAS Institute Srl, Milano, Italy.
Silvano ColettiChelonia SA (AG), Allschwil, Switzerland.
Daniele GregoriE4 Computer Engineering S.p.A, Scandiano (RE), Italy.
Daniel GruffatNanome Inc, San Diego, CA, USA.
Edgardo LeijaNanome Inc, San Diego, CA, USA.
Sam HessenauerNanome Inc, San Diego, CA, USA.
Alberto DelbiancoEnI, San Donato Milanese, Italy.
Marcello AllegrettiDompé Farmaceutici S.p.A, L'Aquila, Italy.
Andrea R BeccariEXSCALATE, Dompé Farmaceutici S.p.A, Napoli, Italy.

Funding

Multiscale Simulations of Biological Systems and ProcessesR35GM122472 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ARIEH WARSHEL · 2017 to 2026
$5.0M
NIGMS NIH HHS R35 GM122472
6 · The paper itself

Abstract

introductionCollaborative computing has attracted great interest in the possibility of joining the efforts of researchers worldwide. Its relevance has further increased during the pandemic crisis since it allows for the strengthening of scientific collaborations while avoiding physical interactions. Thus, the E4C consortium presents the MEDIATE initiative which invited researchers to contribute via their virtual screening simulations that will be combined with AI-based consensus approaches to provide robust and method-independent predictions. The best compounds will be tested, and the biological results will be shared with the scientific community. AREAS COVERED: In this paper, the MEDIATE initiative is described. This shares compounds' libraries and protein structures prepared to perform standardized virtual screenings. Preliminary analyses are also reported which provide encouraging results emphasizing the MEDIATE initiative's capacity to identify active compounds. EXPERT OPINION: Structure-based virtual screening is well-suited for collaborative projects provided that the participating researchers work on the same input file. Until now, such a strategy was rarely pursued and most initiatives in the field were organized as challenges. The MEDIATE platform is focused on SARS-CoV-2 targets but can be seen as a prototype which can be utilized to perform collaborative virtual screening campaigns in any therapeutic field by sharing the appropriate input files.

Indexed as

COVID-19SARS-CoV-2Antiviral AgentsHumansMolecular Docking SimulationProteinsAntiviral AgentsProteinsartificial intelligenceCollaborative computingdocking simulationsdrug repurposingSARS-CoV-2virtual screening

Identifiers

PMID37424369
PMCPMC12404243

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.