Evidence map›Paper›PMID 37422554›Full record

ArticleScientific reports2023

A comparison of different machine-learning techniques for the selection of a panel of metabolites allowing early detection of brain tumors.

Adrian Godlewski, Marcin Czajkowski, Patrycja Mojsak, Tomasz Pienkowski, Wioleta Gosk, Tomasz Lyson, Zenon Mariak, Joanna Reszec, Marcin Kondraciuk, Karol Kaminski and 4 more

Abstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Adrian GodlewskiClinical Research Centre, Medical University of Bialystok, M. Sklodowskiej-Curie 24a, 15-276, Białystok, Poland.
Marcin CzajkowskiFaculty of Computer Science, Bialystok University of Technology, Białystok, Poland.
Patrycja MojsakClinical Research Centre, Medical University of Bialystok, M. Sklodowskiej-Curie 24a, 15-276, Białystok, Poland.
Tomasz PienkowskiClinical Research Centre, Medical University of Bialystok, M. Sklodowskiej-Curie 24a, 15-276, Białystok, Poland.
Wioleta GoskClinical Research Centre, Medical University of Bialystok, M. Sklodowskiej-Curie 24a, 15-276, Białystok, Poland.
Tomasz LysonDepartment of Neurosurgery, Medical University of Bialystok, Białystok, Poland.
Zenon MariakDepartment of Neurosurgery, Medical University of Bialystok, Białystok, Poland.
Joanna ReszecDepartment of Medical Pathomorphology, Medical University of Bialystok, Białystok, Poland.
Marcin KondraciukDepartment of Population Medicine and Lifestyle Diseases Prevention, Medical University of Bialystok, Białystok, Poland.
Karol KaminskiDepartment of Population Medicine and Lifestyle Diseases Prevention, Medical University of Bialystok, Białystok, Poland.
Marek KretowskiFaculty of Computer Science, Bialystok University of Technology, Białystok, Poland.
Marcin MoniuszkoDepartment of Regenerative Medicine and Immune Regulation, Medical University of Bialystok, Białystok, Poland.
Adam KretowskiClinical Research Centre, Medical University of Bialystok, M. Sklodowskiej-Curie 24a, 15-276, Białystok, Poland.
Michal CiborowskiClinical Research Centre, Medical University of Bialystok, M. Sklodowskiej-Curie 24a, 15-276, Białystok, Poland. michal.ciborowski@umb.edu.pl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Metabolomics combined with machine learning methods (MLMs), is a powerful tool for searching novel diagnostic panels. This study was intended to use targeted plasma metabolomics and advanced MLMs to develop strategies for diagnosing brain tumors. Measurement of 188 metabolites was performed on plasma samples collected from 95 patients with gliomas (grade I-IV), 70 with meningioma, and 71 healthy individuals as a control group. Four predictive models to diagnose glioma were prepared using 10 MLMs and a conventional approach. Based on the cross-validation results of the created models, the F1-scores were calculated, then obtained values were compared. Subsequently, the best algorithm was applied to perform five comparisons involving gliomas, meningiomas, and controls. The best results were obtained using the newly developed hybrid evolutionary heterogeneous decision tree (EvoHDTree) algorithm, which was validated using Leave-One-Out Cross-Validation, resulting in an F1-score for all comparisons in the range of 0.476-0.948 and the area under the ROC curves ranging from 0.660 to 0.873. Brain tumor diagnostic panels were constructed with unique metabolites, which reduces the likelihood of misdiagnosis. This study proposes a novel interdisciplinary method for brain tumor diagnosis based on metabolomics and EvoHDTree, exhibiting significant predictive coefficients.

Indexed as

Brain NeoplasmsGliomaMeningeal NeoplasmsMeningiomaBrainHumansMachine Learning

Identifiers

PMID37422554
PMCPMC10329700

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.