Evidence map›Paper›PMID 37421948›Full record

ArticleAmerican journal of human genetics2023

Stretch-activated ion channel TMEM63B associates with developmental and epileptic encephalopathies and progressive neurodegeneration.

Annalisa Vetro, Cristiana Pelorosso, Simona Balestrini, Alessio Masi, Sophie Hambleton, Emanuela Argilli, Valerio Conti, Simone Giubbolini, Rebekah Barrick, Gaber Bergant and 37 more

Open access · hybridAbstract read
In one paragraph

Article in American journal of human genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

47 authors at 20 institutions in 10 countries.

Annalisa VetroNeuroscience Department, Meyer Children's Hospital IRCCS, Florence, Italy.
Cristiana PelorossoNeuroscience Department, Meyer Children's Hospital IRCCS, Florence, Italy.
Simona BalestriniNeuroscience Department, Meyer Children's Hospital IRCCS, Florence, Italy; University of Florence, Florence, Italy.
Alessio MasiDepartment of Neuroscience, Psychology, Drug Research and Child Health (NeuroFarBa), Section of Pharmacology and Toxicology, University of Florence, Florence, Italy.
Sophie HambletonNewcastle University Translational and Clinical Research Institute, Newcastle upon Tyne, UK; Great North Children's Hospital, Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, UK.
Emanuela ArgilliDepartment of Neurology and Institute of Human Genetics and Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.
Valerio ContiNeuroscience Department, Meyer Children's Hospital IRCCS, Florence, Italy.
Simone GiubboliniNational Enterprise for NanoScience and NanoTechnology (NEST), Istituto Nanoscienze, Consiglio Nazionale delle Ricerche (CNR) and Scuola Normale Superiore Pisa, Pisa, Italy.
Rebekah BarrickDivision of Metabolic Disorders, Children's Hospital of Orange County (CHOC), Orange, CA, USA.
Gaber BergantClinical Institute of Genomic Medicine, University Medical Centre Ljubljana, Ljubljana, Slovenia.
Karin WritzlClinical Institute of Genomic Medicine, University Medical Centre Ljubljana, Ljubljana, Slovenia.
Emilia K BijlsmaDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, the Netherlands.
Theresa BrunetInstitute of Human Genetics, School of Medicine, Technical University Munich, Munich, Germany; Department of Pediatric Neurology and Developmental Medicine, Dr. v. Hauner Children's Hospital, LMU - University of Munich, München, Germany.
Pilar CacheiroWilliam Harvey Research Institute, Queen Mary University of London, London, UK.
Davide MeiNeuroscience Department, Meyer Children's Hospital IRCCS, Florence, Italy.
Anita DevlinNewcastle University Translational and Clinical Research Institute, Newcastle upon Tyne, UK; Great North Children's Hospital, Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, UK.
Mariëtte J V HofferDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, the Netherlands.
Keren MacholDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Guido MannaioniDepartment of Neuroscience, Psychology, Drug Research and Child Health (NeuroFarBa), Section of Pharmacology and Toxicology, University of Florence, Florence, Italy.
Masamune SakamotoDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama 236-0004 Japan.
Manoj P MenezesDepartment of Neurology, The Children's Hospital at Westmead and the Children's Hospital at Westmead Clinical School, University of Sydney, Westmead NSW, Australia.
Thomas CourtinSorbonne Université, Institut du Cerveau - Paris Brain Institute - ICM, Inserm, CNRS, Paris, France; Assistance Publique Hôpitaux de Paris, Hôpital Pitié-Salpêtrière, Département de Génétique, DMU BioGeM, Paris, France.
Elliott SherrDepartment of Neurology and Institute of Human Genetics and Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.
Riccardo ParraNational Enterprise for NanoScience and NanoTechnology (NEST), Istituto Nanoscienze, Consiglio Nazionale delle Ricerche (CNR) and Scuola Normale Superiore Pisa, Pisa, Italy.
Ruth RichardsonNorthern Genetics Service, Newcastle upon Tyne hospitals NHS Foundation Trust, Newcastle, UK.
Tony RoscioliNew South Wales Health Pathology Randwick Genomics, Prince of Wales Hospital, Sydney, NSW 2031, Australia; Neuroscience Research Australia, Sydney, NSW 2031, Australia.
Marcello ScalaDepartment of Neurosciences, Rehabilitation, Ophthalmology, Genetics, Maternal and Child Health, University of Genoa, Genoa, Italy.
Celina von StülpnagelDepartment of Pediatric Neurology and Developmental Medicine, Dr. v. Hauner Children's Hospital, LMU - University of Munich, München, Germany; Institute for Transition, Rehabilitation and Palliation, Paracelsus Medical University, Salzburg, Austria.
Damian SmedleyWilliam Harvey Research Institute, Queen Mary University of London, London, UK.
TMEM63B collaborators
Genomics England Research Consortium
Annalaura TorellaDepartment of Precision Medicine, University "Luigi Vanvitelli," Naples, Italy; Telethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Italy.
Jun TohyamaDepartment of Child Neurology, Nishi-Niigata Chuo National Hospital, Niigata 950-2085, Japan.
Reiko KoichiharaDepartment for Child Health and Human Development, Saitama Children's Medical Center, Saitama 330-8777, Japan.
Keisuke HamadaDepartment of Biochemistry, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Kazuhiro OgataDepartment of Biochemistry, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Takashi SuzukiSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan.
Atsushi SugieBrain Research Institute, Niigata University, Niigata 951-8585, Japan.
Jasper J van der SmagtDepartment of Genetics, University Medical Center Utrecht, Utrecht, the Netherlands.
Koen van GassenDepartment of Genetics, University Medical Center Utrecht, Utrecht, the Netherlands.
Stephanie ValenceCentre de référence Maladies Rares "Déficience intellectuelle de cause rare," Sorbonne Université, Paris, France; Département de Neuropédiatrie, Hôpital Armand Trousseau, APHP, Sorbonne Université, Paris, France.
Emma VitteryNorthern Genetics Service, Newcastle upon Tyne hospitals NHS Foundation Trust, Newcastle, UK.
Stephen MaloneDepartment of Neurosciences, Queensland Children's Hospital, Brisbane QLD, Australia; Centre for Advanced Imaging, University of Queensland, St Lucia QLD, Australia.
Mitsuhiro KatoDepartment of Pediatrics, Showa University School of Medicine, Tokyo 142-8666, Japan.
Naomichi MatsumotoDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama 236-0004 Japan.
Gian Michele RattoNational Enterprise for NanoScience and NanoTechnology (NEST), Istituto Nanoscienze, Consiglio Nazionale delle Ricerche (CNR) and Scuola Normale Superiore Pisa, Pisa, Italy; Istituto Neuroscienze CNR, Padova, Italy.
Renzo GuerriniNeuroscience Department, Meyer Children's Hospital IRCCS, Florence, Italy; University of Florence, Florence, Italy. Electronic address: r.guerrini@meyer.it.
Meyer Children's Hospital · ITNewcastle upon Tyne Hospitals NHS Foundation Trust · GBIstituto Nanoscienze · ITLeiden University Medical Center · NLSaitama Children's Medical Center · JPUniversity Medical Center Utrecht · NLBaylor College of Medicine · USCentre National de la Recherche Scientifique · FRLjubljana University Medical Centre · SIQueen Mary University of London · GBShowa University · JPTokyo Institute of Technology · JPUniversity of California, San Francisco · USUniversity of Campania "Luigi Vanvitelli" · ITUniversity of Florence · ITYokohama City University · JPChildren's Hospital of Orange County · USMünchen Klinik · DENational Enterprise for NanoScience and NanoTechnology · ITParacelsus Medical University · AT

Funding

Joint Center for Mendelian GenomicsUM1HG008900 · NHGRI · BROAD INSTITUTE, INC. · PI O'DONNELL-LURIA, ANNE, REHM, HEIDI L · 2016 to 2020
$16.5M
A powerful web-based discovery platform for rare disease geneticsR01HG009141 · NHGRI · BROAD INSTITUTE, INC. · PI QUINLAN, AARON R, REHM, HEIDI L · 2017 to 2020
$2.9M
Medical Research Council MR/S006753/1NHGRI NIH HHS R01 HG009141NHGRI NIH HHS UM1 HG008900
6 · The paper itself

Abstract

By converting physical forces into electrical signals or triggering intracellular cascades, stretch-activated ion channels allow the cell to respond to osmotic and mechanical stress. Knowledge of the pathophysiological mechanisms underlying associations of stretch-activated ion channels with human disease is limited. Here, we describe 17 unrelated individuals with severe early-onset developmental and epileptic encephalopathy (DEE), intellectual disability, and severe motor and cortical visual impairment associated with progressive neurodegenerative brain changes carrying ten distinct heterozygous variants of TMEM63B, encoding for a highly conserved stretch-activated ion channel. The variants occurred de novo in 16/17 individuals for whom parental DNA was available and either missense, including the recurrent p.Val44Met in 7/17 individuals, or in-frame, all affecting conserved residues located in transmembrane regions of the protein. In 12 individuals, hematological abnormalities co-occurred, such as macrocytosis and hemolysis, requiring blood transfusions in some. We modeled six variants (p.Val44Met, p.Arg433His, p.Thr481Asn, p.Gly580Ser, p.Arg660Thr, and p.Phe697Leu), each affecting a distinct transmembrane domain of the channel, in transfected Neuro2a cells and demonstrated inward leak cation currents across the mutated channel even in isotonic conditions, while the response to hypo-osmotic challenge was impaired, as were the Ca

Indexed as

Brain DiseasesIntellectual DisabilityBrainHumansIon ChannelsPhenotypeIon Channelsabnormal myelinationepilepsyepileptic encephalopathyhemolytic anemiainfantile spasmsion channelsleak cation currentsosmotic stresswhite matter abnormality

Identifiers

PMID37421948
PMCPMC10432263
OpenAlexW4383533304

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.