Evidence map›Paper›PMID 37421233›Full record

ArticlePlant biotechnology journal2023

A promoter trap in transgenic citrus mediates recognition of a broad spectrum of Xanthomonas citri pv. citri TALEs, including in planta-evolved derivatives.

Deepak Shantharaj, Gerald V Minsavage, Vladimir Orbović, Gloria A Moore, Danalyn R Holmes, Patrick Römer, Diana M Horvath, Thomas Lahaye, Jeffrey B Jones

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Deepak ShantharajPlant Pathology Department, University of Florida, Gainesville, FL, USA.
Gerald V MinsavagePlant Pathology Department, University of Florida, Gainesville, FL, USA.
Vladimir OrbovićCitrus Research and Education Center, University of Florida, Lake Alfred, FL, USA.
Gloria A MooreDepartment of Horticultural Sciences, University of Florida, Gainesville, FL, USA.
Danalyn R HolmesZentrum für Molekularbiologie der Pflanzen (ZMBP), Eberhard-Karls-Universität Tübingen, Tübingen, Germany.
Patrick RömerGenetics, Department of Biology, Ludwig-Maximilians-University Munich, Martinsried, Germany.
Diana M Horvath2Blades Foundation, Evanston, IL, USA.
Thomas LahayeZentrum für Molekularbiologie der Pflanzen (ZMBP), Eberhard-Karls-Universität Tübingen, Tübingen, Germany.ORCID 0000-0001-5257-336X
Jeffrey B JonesPlant Pathology Department, University of Florida, Gainesville, FL, USA.ORCID 0000-0003-0061-470X
University of Florida · USUniversity of Tübingen · DE2Blades Foundation · USFlorida Department of Citrus · USLudwig-Maximilians-Universität München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Citrus bacterial canker (CBC), caused by Xanthomonas citri subsp. citri (Xcc), causes dramatic losses to the citrus industry worldwide. Transcription activator-like effectors (TALEs), which bind to effector binding elements (EBEs) in host promoters and activate transcription of downstream host genes, contribute significantly to Xcc virulence. The discovery of the biochemical context for the binding of TALEs to matching EBE motifs, an interaction commonly referred to as the TALE code, enabled the in silico prediction of EBEs for each TALE protein. Using the TALE code, we engineered a synthetic resistance (R) gene, called the Xcc-TALE-trap, in which 14 tandemly arranged EBEs, each capable of autonomously recognizing a particular Xcc TALE, drive the expression of Xanthomonas avrGf2, which encodes a bacterial effector that induces plant cell death. Analysis of a corresponding transgenic Duncan grapefruit showed that transcription of the cell death-inducing executor gene, avrGf2, was strictly TALE-dependent and could be activated by several different Xcc TALE proteins. Evaluation of Xcc strains from different continents showed that the Xcc-TALE-trap mediates resistance to this global panel of Xcc isolates. We also studied in planta-evolved TALEs (eTALEs) with novel DNA-binding domains and found that these eTALEs also activate the Xcc-TALE-trap, suggesting that the Xcc-TALE-trap is likely to confer durable resistance to Xcc. Finally, we show that the Xcc-TALE-trap confers resistance not only in laboratory infection assays but also in more agriculturally relevant field studies. In conclusion, transgenic plants containing the Xcc-TALE-trap offer a promising sustainable approach to control CBC.

Indexed as

CitrusXanthomonasPlant DiseasesPromoter Regions, GeneticTranscription Activator-Like EffectorsTranscription Activator-Like EffectorsAvrBs3AvrGf1AvrGf2executor-type resistance (R) genetranscriptional activator-like effector (TALE) proteinXanthomonas citri subsp. citri (Xcc)

Identifiers

PMID37421233
PMCPMC10502743
OpenAlexW4383599210

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.