Evidence map›Paper›PMID 37420529›Full record

ArticleSensors (Basel, Switzerland)2023

A Holistic 4D Approach to Optimize Intrinsic and Extrinsic Factors Contributing to Variability in Microarray Biosensing in Glycomics.

Paras H Kundalia, Lucia Pažitná, Kristína Kianičková, Eduard Jáné, Lenka Lorencová, Jaroslav Katrlík

Open access · goldAbstract read
In one paragraph

Article in Sensors (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Surface-Controlled Sialoside-Based Biosensing of Viral and Bacterial Neuraminidases.Langmuir : the ACS journal of surfaces and colloids · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Paras H KundaliaDepartment of Glycobiotechnology, Institute of Chemistry, Slovak Academy of Sciences, SK-84538 Bratislava, Slovakia.ORCID 0009-0002-0142-166X
Lucia PažitnáDepartment of Glycobiotechnology, Institute of Chemistry, Slovak Academy of Sciences, SK-84538 Bratislava, Slovakia.
Kristína KianičkováDepartment of Glycobiotechnology, Institute of Chemistry, Slovak Academy of Sciences, SK-84538 Bratislava, Slovakia.ORCID 0000-0001-5744-8381
Eduard JánéDepartment of Glycobiotechnology, Institute of Chemistry, Slovak Academy of Sciences, SK-84538 Bratislava, Slovakia.
Lenka LorencováDepartment of Glycobiotechnology, Institute of Chemistry, Slovak Academy of Sciences, SK-84538 Bratislava, Slovakia.
Jaroslav KatrlíkDepartment of Glycobiotechnology, Institute of Chemistry, Slovak Academy of Sciences, SK-84538 Bratislava, Slovakia.
Institute of Chemistry of the Slovak Academy of Sciences · SK

Funding

European Regional Development Fund ITMS2014+: 313011V358European Regional Development Fund ITMS2014+: 313011W410European Regional Development Fund ITMS: 313011W428European Union 814029Slovak Research and Development Agency APVV-20-0243Vedecká grantová agentúra MŠVVaŠ SR a SAV (VEGA) VEGA 2/0120/22
6 · The paper itself

Abstract

Protein-carbohydrate interactions happen to be a crucial facet of biology, discharging a myriad of functions. Microarrays have become a premier choice to discern the selectivity, sensitivity and breadth of these interactions in a high-throughput manner. The precise recognition of target glycan ligands among the plethora of others is central for any glycan-targeting probe being tested by microarray analyses. Ever since the introduction of the microarray as an elemental tool for high-throughput glycoprofiling, numerous distinct array platforms possessing different customizations and assemblies have been developed. Accompanying these customizations are various factors ushering variances across array platforms. In this primer, we investigate the influence of various extrinsic factors, namely printing parameters, incubation procedures, analyses and array storage conditions on the protein-carbohydrate interactions and evaluate these factors for the optimal performance of microarray glycomics analysis. We hereby propose a 4D approach (Design-Dispense-Detect-Deduce) to minimize the effect of these extrinsic factors on glycomics microarray analyses and thereby streamline cross-platform analyses and comparisons. This work will aid in optimizing microarray analyses for glycomics, minimize cross-platform disparities and bolster the further development of this technology.

Indexed as

Body FluidsGlycomicsLigandsMicroarray AnalysisPolysaccharidesLigandsPolysaccharidesaffinity-based methodsbiosensorglycanhigh-throughput glycoprofilinglectinmicroarraynon-contact spottingpiezo-electric dispensing

Identifiers

PMID37420529
PMCPMC10301416
OpenAlexW4379538270

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.