Evidence map›Paper›PMID 37419873›Full record

ArticleNature communications2023

Expanded vacuum-stable gels for multiplexed high-resolution spatial histopathology.

Yunhao Bai, Bokai Zhu, John-Paul Oliveria, Bryan J Cannon, Dorien Feyaerts, Marc Bosse, Kausalia Vijayaragavan, Noah F Greenwald, Darci Phillips, Christian M Schürch and 10 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Mass Spectrometry Imaging.Analytical chemistry · 2025
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Multiplex protein imaging in tumour biology.Nature reviews. Cancer · 2024
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Yunhao BaiDepartment of Pathology, Stanford University, Stanford, CA, USA.
Bokai ZhuDepartment of Pathology, Stanford University, Stanford, CA, USA.
John-Paul OliveriaDepartment of Translational Medicine, Genentech, Inc., South San Francisco, CA, USA.
Bryan J CannonDepartment of Pathology, Stanford University, Stanford, CA, USA.ORCID 0000-0003-4418-1803
Dorien FeyaertsDepartment of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Stanford, CA, USA.ORCID 0000-0002-0795-6625
Marc BosseDepartment of Pathology, Stanford University, Stanford, CA, USA.ORCID 0000-0003-4912-8059
Kausalia VijayaragavanDepartment of Pathology, Stanford University, Stanford, CA, USA.
Noah F GreenwaldDepartment of Pathology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-7836-4379
Darci PhillipsDepartment of Pathology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-0804-3342
Christian M SchürchDepartment of Pathology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-1792-1768
Samuel M NaikDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-0505-4839
Edward A GanioDepartment of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Stanford, CA, USA.
Brice GaudilliereDepartment of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Stanford, CA, USA.ORCID 0000-0002-3475-5706
Scott J RodigDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Michael B MillerDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-6205-3314
Michael AngeloDepartment of Pathology, Stanford University, Stanford, CA, USA.ORCID 0000-0003-1531-5067
Sean C BendallDepartment of Pathology, Stanford University, Stanford, CA, USA.ORCID 0000-0003-1341-2453
Xavier Rovira-ClavéDepartment of Pathology, Stanford University, Stanford, CA, USA. x.rovira.c@gmail.com.ORCID 0000-0001-9994-7007
Garry P NolanDepartment of Pathology, Stanford University, Stanford, CA, USA. gpnolan@stanford.edu.ORCID 0000-0002-8862-9043
Sizun JiangDepartment of Pathology, Stanford University, Stanford, CA, USA. sjiang3@bidmc.harvard.edu.ORCID 0000-0001-6149-3142

Funding

MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
Project 4: Novel reagent development to enable molecular characterizationU19AG065156 · NIA · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2020 to 2024
$15.9M
UCSF Stanford Endometriosis Center for Discovery, Innovation, Training and Community EngagementP01HD106414 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI OPOKU-ANANE, JESSICA · 2021 to 2025
$7.1M
MIRIAD - Multiplexed Imaging of Resilience In Alzheimers DiseaseR01AG057915 · NIA · STANFORD UNIVERSITY · PI ANGELO, ROBERT MICHAEL, BENDALL, SEAN CURTIS · 2017 to 2021
$4.5M
Deciphering the Glycan Code in Human Alzheimer’s Disease BrainR01AG078702 · NIA · UNIVERSITY OF KENTUCKY · PI Peggi M Angel, Sean Curtis Bendall · 2022 to 2026
$3.8M
The Phenotypic Landscape of Cognitive Decline as Revealed by Next-Generation Multiplexed Ion Beam ImagingR01AG056287 · NIA · STANFORD UNIVERSITY · PI ANGELO, ROBERT MICHAEL, BENDALL, SEAN CURTIS · 2017 to 2021
$2.6M
Spatial-Temporal Dissection of Stratified Host Tissue Responses to Severe acute respiratory syndrome-related coronaviruses in situ to Understand Intra-host PathogenesisDP2AI171139 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI Sizun Jiang · 2022 to 2026
$2.3M
Harnessing the human monocyte system to improve surgical recoveryR35GM137936 · NIGMS · STANFORD UNIVERSITY · PI GAUDILLIERE, BRICE · 2020 to 2024
$2.0M
Uncoupling Age- Versus Cognitive-Related Cellular Senescence in Alzheimer's DiseaseR01AG068279 · NIA · STANFORD UNIVERSITY · PI BENDALL, SEAN CURTIS · 2020 to 2024
$1.9M
Genome-Wide Somatic Mutation in Alzheimer's Disease Pathogenesis Using Single Neuron AnalysisK08AG065502 · NIA · BRIGHAM AND WOMEN'S HOSPITAL · PI MILLER, MICHAEL B · 2020 to 2024
$848k
Predicting response to anti-PD-1 therapy in triple negative breast cancer by comprehensive profiling of the tumor microenvironmentF31CA246880 · NCI · STANFORD UNIVERSITY · PI GREENWALD, NOAH · 2020 to 2021
$53k
NCI NIH HHS F31 CA246880NIAID NIH HHS DP2 AI171139NIAID NIH HHS T32 AI007290NIA NIH HHS K08 AG065502NIA NIH HHS R01 AG056287NIA NIH HHS R01 AG057915NIA NIH HHS R01 AG068279NIA NIH HHS R01 AG078702NIA NIH HHS U19 AG065156NICHD NIH HHS P01 HD106414NIGMS NIH HHS R35 GM137936
6 · The paper itself

Abstract

Cellular organization and functions encompass multiple scales in vivo. Emerging high-plex imaging technologies are limited in resolving subcellular biomolecular features. Expansion Microscopy (ExM) and related techniques physically expand samples for enhanced spatial resolution, but are challenging to be combined with high-plex imaging technologies to enable integrative multiscaled tissue biology insights. Here, we introduce Expand and comPRESS hydrOgels (ExPRESSO), an ExM framework that allows high-plex protein staining, physical expansion, and removal of water, while retaining the lateral tissue expansion. We demonstrate ExPRESSO imaging of archival clinical tissue samples on Multiplexed Ion Beam Imaging and Imaging Mass Cytometry platforms, with detection capabilities of > 40 markers. Application of ExPRESSO on archival human lymphoid and brain tissues resolved tissue architecture at the subcellular level, particularly that of the blood-brain barrier. ExPRESSO hence provides a platform for extending the analysis compatibility of hydrogel-expanded biospecimens to mass spectrometry, with minimal modifications to protocols and instrumentation.

Indexed as

MicroscopyProteinsHumansHydrogelsVacuumHydrogelsProteins

Identifiers

PMID37419873
PMCPMC10329015

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.