Evidence map›Paper›PMID 37417811›Full record

ArticleDevelopment (Cambridge, England)2023

Core conserved transcriptional regulatory networks define the invasive trophoblast cell lineage.

Ha T H Vu, Regan L Scott, Khursheed Iqbal, Michael J Soares, Geetu Tuteja

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Cited2 is a key regulator of placental development and plasticity.BioEssays : news and reviews in molecular, cellular and developmental biology · 2024
    Review
  8. Article
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Ha T H VuDepartment of Genetics, Development, and Cell Biology, Iowa State University, Ames, IA 50011, USA.ORCID 0000-0003-4161-5952
Regan L ScottInstitute for Reproductive and Developmental Sciences and Department of Pathology and Laboratory Medicine, University of Kansas Medical Center, Kansas City, KS 66160, USA.ORCID 0000-0001-6294-5294
Khursheed IqbalInstitute for Reproductive and Developmental Sciences and Department of Pathology and Laboratory Medicine, University of Kansas Medical Center, Kansas City, KS 66160, USA.ORCID 0000-0002-6742-4591
Michael J SoaresInstitute for Reproductive and Developmental Sciences and Department of Pathology and Laboratory Medicine, University of Kansas Medical Center, Kansas City, KS 66160, USA.ORCID 0000-0001-7158-1592
Geetu TutejaDepartment of Genetics, Development, and Cell Biology, Iowa State University, Ames, IA 50011, USA.ORCID 0000-0002-8726-9955

Funding

TROPHOBLAST DIFFERENTIATIONR01HD020676 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI MICHAEL J SOARES · 1986 to 2026
$10.1M
Environmental Exposures, AHR Activation, and Placental Origins of DevelopmentR01ES029280 · NIEHS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI GRUNDBERG, ELIN, SOARES, MICHAEL J · 2018 to 2022
$2.6M
Anti-Coagulation Factors and PlacentationR01HD099638 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SOARES, MICHAEL J · 2019 to 2023
$2.5M
Trophoblast-Guided Uterine Transformation in the Establishment of PregnancyR01HD105734 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI MICHAEL J SOARES · 2022 to 2026
$2.2M
Transcriptional regulatory networks govering placental development.R01HD096083 · NICHD · IOWA STATE UNIVERSITY · PI TUTEJA, GEETU · 2018 to 2022
$1.5M
Trophoblast-Uterine Cell Dynamics at the Maternal-Fetal InterfaceR21HD104033 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SOARES, MICHAEL J, TUTEJA, GEETU · 2020 to 2021
$424k
Establishment of the Uterine-Placental InterfaceF31HD104495 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SCOTT, REGAN LEIGH · 2021 to 2025
$169k
NICHD NIH HHS F31 HD104495NICHD NIH HHS R01 HD020676NICHD NIH HHS R01 HD096083NICHD NIH HHS R01 HD099638NICHD NIH HHS R01 HD105734NICHD NIH HHS R21 HD104033NIEHS NIH HHS R01 ES029280NIH HHS ES029280NIH HHS HD104495
6 · The paper itself

Abstract

The invasive trophoblast cell lineages in rat and human share crucial responsibilities in establishing the uterine-placental interface of the hemochorial placenta. These observations have led to the rat becoming an especially useful animal model for studying hemochorial placentation. However, our understanding of similarities or differences between regulatory mechanisms governing rat and human invasive trophoblast cell populations is limited. In this study, we generated single-nucleus ATAC-seq data from gestation day 15.5 and 19.5 rat uterine-placental interface tissues, and integrated the data with single-cell RNA-seq data generated at the same stages. We determined the chromatin accessibility profiles of invasive trophoblast, natural killer, macrophage, endothelial and smooth muscle cells, and compared invasive trophoblast chromatin accessibility with extravillous trophoblast cell accessibility. In comparing chromatin accessibility profiles between species, we found similarities in patterns of gene regulation and groups of motifs enriched in accessible regions. Finally, we identified a conserved gene regulatory network in invasive trophoblast cells. Our data, findings and analysis will facilitate future studies investigating regulatory mechanisms essential for the invasive trophoblast cell lineage.

Indexed as

Gene Regulatory NetworksTrophoblastsAnimalsCell NucleusChromatinFemalePlacentaPregnancyRatsSingle-Cell Gene Expression AnalysisTranscription FactorsUterusChromatinTranscription FactorsChromatinPlacentationRatRegulatory networksSingle nucleusTrophoblast

Identifiers

PMID37417811
PMCPMC10445752

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.