Evidence map›Paper›PMID 37416476›Full record

ArticleiScience2023

Metabolic regulation of CTCF expression and chromatin association dictates starvation response in mice and flies.

Devashish Sen, Babukrishna Maniyadath, Shreyam Chowdhury, Arshdeep Kaur, Subhash Khatri, Arnab Chakraborty, Neelay Mehendale, Snigdha Nadagouda, U S Sandra, Siddhesh S Kamat and 1 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 10 citations in OpenAlex.

  1. Crosstalk BetweenCancers · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Devashish SenDepartment of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra 400005, India.
Babukrishna ManiyadathDepartment of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra 400005, India.
Shreyam ChowdhuryDepartment of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra 400005, India.
Arshdeep KaurDepartment of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra 400005, India.
Subhash KhatriDepartment of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra 400005, India.
Arnab ChakrabortyDepartment of Biology, Indian Institute of Science Education and Research, Pune, Maharashtra 411008, India.
Neelay MehendaleDepartment of Biology, Indian Institute of Science Education and Research, Pune, Maharashtra 411008, India.
Snigdha NadagoudaTata Institute of Fundamental Research- Hyderabad (TIFR-H), Hyderabad, Telangana 500046, India.
U S SandraDepartment of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra 400005, India.
Siddhesh S KamatDepartment of Biology, Indian Institute of Science Education and Research, Pune, Maharashtra 411008, India.
Ullas Kolthur-SeetharamDepartment of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra 400005, India.
Tata Institute of Fundamental Research · INIndian Institute of Science Education and Research Pune · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Coordinated temporal control of gene expression is essential for physiological homeostasis, especially during metabolic transitions. However, the interplay between chromatin architectural proteins and metabolism in regulating transcription is less understood. Here, we demonstrate a conserved bidirectional interplay between CTCF (CCCTC-binding factor) expression/function and metabolic inputs during feed-fast cycles. Our results indicate that its loci-specific functional diversity is associated with physiological plasticity in mouse hepatocytes. CTCF differential expression and long non-coding RNA-Jpx mediated changes in chromatin occupancy, unraveled its paradoxical yet tuneable functions, which are governed by metabolic inputs. We illustrate the key role of CTCF in controlling temporal cascade of transcriptional response, with effects on hepatic mitochondrial energetics and lipidome. Underscoring the evolutionary conservation of CTCF-dependent metabolic homeostasis, CTCF knockdown in flies abrogated starvation resistance. In summary, we demonstrate the interplay between CTCF and metabolic inputs that highlights the coupled plasticity of physiological responses and chromatin function.

Indexed as

Biological sciencesNatural sciences

Identifiers

PMID37416476
PMCPMC10320512
OpenAlexW4380992127

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.