Evidence map›Paper›PMID 37415333›Full record

ArticlePlant communications2024

Dissection of a rapidly evolving wheat resistance gene cluster by long-read genome sequencing accelerated the cloning of Pm69.

Yinghui Li, Zhen-Zhen Wei, Hanan Sela, Liubov Govta, Valentyna Klymiuk, Rajib Roychowdhury, Harmeet Singh Chawla, Jennifer Ens, Krystalee Wiebe, Valeria Bocharova and 9 more

Open access · goldAbstract read
In one paragraph

Article in Plant communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
33.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 84 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
  6. Article
  7. Fine mapping of the TdHLS gene controlling hairy leaf sheath from wild emmer wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  8. Article
  9. Fine mapping and candidate gene dissection of the wheat powdery mildew resistance gene PmPBDH.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  10. Article
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  12. Pan-NLRome ofFrontiers in plant science · 2026
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  20. Genetic Basis Identification of aPlants (Basel, Switzerland) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 4 countries.

Yinghui LiInstitute of Evolution, University of Haifa, Mt. Carmel, Haifa 3498838, Israel; The Department of Evolutionary and Environmental Biology, University of Haifa, Mt. Carmel, Haifa 3498838, Israel.
Zhen-Zhen WeiInstitute of Evolution, University of Haifa, Mt. Carmel, Haifa 3498838, Israel; The Department of Evolutionary and Environmental Biology, University of Haifa, Mt. Carmel, Haifa 3498838, Israel; The Institute of Plant Protection, Sichuan Academy of Agricultural Sciences, Chengdu 610066, China.
Hanan SelaInstitute of Evolution, University of Haifa, Mt. Carmel, Haifa 3498838, Israel; The Department of Evolutionary and Environmental Biology, University of Haifa, Mt. Carmel, Haifa 3498838, Israel.
Liubov GovtaInstitute of Evolution, University of Haifa, Mt. Carmel, Haifa 3498838, Israel; The Department of Evolutionary and Environmental Biology, University of Haifa, Mt. Carmel, Haifa 3498838, Israel.
Valentyna KlymiukInstitute of Evolution, University of Haifa, Mt. Carmel, Haifa 3498838, Israel; The Department of Evolutionary and Environmental Biology, University of Haifa, Mt. Carmel, Haifa 3498838, Israel; Crop Development Centre and Department of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK S7N 5A8, Canada.
Rajib RoychowdhuryInstitute of Evolution, University of Haifa, Mt. Carmel, Haifa 3498838, Israel; The Department of Evolutionary and Environmental Biology, University of Haifa, Mt. Carmel, Haifa 3498838, Israel.
Harmeet Singh ChawlaCrop Development Centre and Department of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK S7N 5A8, Canada.
Jennifer EnsCrop Development Centre and Department of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK S7N 5A8, Canada.
Krystalee WiebeCrop Development Centre and Department of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK S7N 5A8, Canada.
Valeria BocharovaInstitute of Evolution, University of Haifa, Mt. Carmel, Haifa 3498838, Israel; The Department of Evolutionary and Environmental Biology, University of Haifa, Mt. Carmel, Haifa 3498838, Israel.
Roi Ben-DavidInstitute of Evolution, University of Haifa, Mt. Carmel, Haifa 3498838, Israel; The Department of Evolutionary and Environmental Biology, University of Haifa, Mt. Carmel, Haifa 3498838, Israel; Department of Vegetables and Field Crops, Institute of Plant Sciences, Agricultural Research Organization (ARO) - Volcani Center, Rishon Lezion 7505101, Israel.
Prerna B PawarInstitute of Evolution, University of Haifa, Mt. Carmel, Haifa 3498838, Israel; The Department of Evolutionary and Environmental Biology, University of Haifa, Mt. Carmel, Haifa 3498838, Israel.
Yuqi ZhangDepartment of Crop Genomics and Bioinformatics, China Agricultural University, Beijing 100094, China.
Samidha JaiwarInstitute of Evolution, University of Haifa, Mt. Carmel, Haifa 3498838, Israel; The Department of Evolutionary and Environmental Biology, University of Haifa, Mt. Carmel, Haifa 3498838, Israel.
István MolnárInstitute of Experimental Botany of the Czech Academy of Sciences, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, 779 00 Olomouc, Czech Republic.
Jaroslav DoleželInstitute of Experimental Botany of the Czech Academy of Sciences, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, 779 00 Olomouc, Czech Republic.
Gitta CoakerPlant Pathology Department, University of California, Davis, Davis, CA 95616, USA.
Curtis J PozniakCrop Development Centre and Department of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK S7N 5A8, Canada.
Tzion FahimaInstitute of Evolution, University of Haifa, Mt. Carmel, Haifa 3498838, Israel; The Department of Evolutionary and Environmental Biology, University of Haifa, Mt. Carmel, Haifa 3498838, Israel. Electronic address: tfahima@evo.haifa.ac.il.
University of Haifa · ILUniversity of Saskatchewan · CACzech Academy of Sciences, Institute of Experimental Botany · CZChina Agricultural University · CNInstitute of Plant Protection · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene cloning in repeat-rich polyploid genomes remains challenging. Here, we describe a strategy for overcoming major bottlenecks in cloning of the powdery mildew resistance gene (R-gene) Pm69 derived from tetraploid wild emmer wheat. A conventional positional cloning approach was not effective owing to suppressed recombination. Chromosome sorting was compromised by insufficient purity. A Pm69 physical map, constructed by assembling Oxford Nanopore Technology (ONT) long-read genome sequences, revealed a rapidly evolving nucleotide-binding leucine-rich repeat (NLR) R-gene cluster with structural variations. A single candidate NLR was identified by anchoring RNA sequencing reads from susceptible mutants to ONT contigs and was validated by virus-induced gene silencing. Pm69 is likely a newly evolved NLR and was discovered in only one location across the wild emmer wheat distribution range in Israel. Pm69 was successfully introgressed into cultivated wheat, and a diagnostic molecular marker was used to accelerate its deployment and pyramiding with other R-genes.

Indexed as

Genes, PlantTriticumChromosome MappingCloning, MolecularMultigene Family

Identifiers

PMID37415333
PMCPMC10811346
OpenAlexW4383197277

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.