Evidence map›Paper›PMID 37415185›Full record

ReviewEpigenetics & chromatin2023

Etiology of super-enhancer reprogramming and activation in cancer.

Royce W Zhou, Ramon E Parsons

Open access · goldAbstract readReview
In one paragraph

Review in Epigenetics & chromatin, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  8. Article
  9. Review
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  13. Review
  14. Article
  15. Extrachromosomal DNA in cancer.Nature reviews. Cancer · 2024
    Review
  16. Review
  17. Targeting super-enhancer activity for colorectal cancer therapy.American journal of translational research · 2024
    Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Royce W ZhouThe Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Ramon E ParsonsThe Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA. ramon.parsons@mssm.edu.
Icahn School of Medicine at Mount Sinai · USUniversity of California, San Francisco · US

Funding

THE TISCH CANCER INSTITUTE - CANCER CENTER SUPPORT GRANTP30CA196521 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Ramon E Parsons · 2015 to 2026
$35.4M
PTEN and CancerR35CA220491 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI PARSONS, RAMON E · 2017 to 2023
$6.8M
(PQ9) Developing EZH2 Degraders for Treating Triple-Negative Breast CancerR01CA230854 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI JIN, JIAN, PARSONS, RAMON E · 2018 to 2022
$1.5M
Functional analyses of super-enhancer dysregulation in colorectal carcinoma patient samples.F30CA243207 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ZHOU, ROYCE · 2019 to 2022
$190k
NCI NIH HHS F30 CA243207NCI NIH HHS P30 CA196521NCI NIH HHS R01 CA230854NCI NIH HHS R35 CA220491
6 · The paper itself

Abstract

Super-enhancers are large, densely concentrated swaths of enhancers that regulate genes critical for cell identity. Tumorigenesis is accompanied by changes in the super-enhancer landscape. These aberrant super-enhancers commonly form to activate proto-oncogenes, or other genes upon which cancer cells depend, that initiate tumorigenesis, promote tumor proliferation, and increase the fitness of cancer cells to survive in the tumor microenvironment. These include well-recognized master regulators of proliferation in the setting of cancer, such as the transcription factor MYC which is under the control of numerous super-enhancers gained in cancer compared to normal tissues. This Review will cover the expanding cell-intrinsic and cell-extrinsic etiology of these super-enhancer changes in cancer, including somatic mutations, copy number variation, fusion events, extrachromosomal DNA, and 3D chromatin architecture, as well as those activated by inflammation, extra-cellular signaling, and the tumor microenvironment.

Indexed as

DNA Copy Number VariationsNeoplasmsCarcinogenesisEnhancer Elements, GeneticHumansTranscription FactorsTumor MicroenvironmentTranscription FactorsCancerEnhancersExtrachromosomal DNAInflammationInsulatorsNon-coding mutationsPhase separationSuper-enhancersTherapeutic resistanceTopologically associated domainTumor microenvironment

Identifiers

PMID37415185
PMCPMC10324276
OpenAlexW4383368959

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.