Evidence map›Paper›PMID 37415124›Full record

ArticleBMC genomics2023

Genome-wide identification, characterization and transcriptional profile of the SWEET gene family in Dendrobium officinale.

Li Hao, Xin Shi, Shunwang Qin, Jiahong Dong, Huan Shi, Yuehua Wang, Yi Zhang

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Li HaoCollege of Food and Biological Engineering, Chengdu University, Chengdu, 610106, PR China.
Xin ShiCollege of Food and Biological Engineering, Chengdu University, Chengdu, 610106, PR China.
Shunwang QinCollege of Food and Biological Engineering, Chengdu University, Chengdu, 610106, PR China.
Jiahong DongCollege of Food and Biological Engineering, Chengdu University, Chengdu, 610106, PR China.
Huan ShiCollege of Food and Biological Engineering, Chengdu University, Chengdu, 610106, PR China.
Yuehua WangCollege of Food and Biological Engineering, Chengdu University, Chengdu, 610106, PR China. 1961689636@qq.com.
Yi ZhangChina-Croatia 'Belt and Road' Joint Laboratory on Biodiversity and Ecosystem Services, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, PR China. zhangyi1@cib.ac.cn.ORCID http://orcid.org/0000-0002-9319-4806
Chengdu University · CNChinese Academy of Sciences · CN

Funding

Department of Science and Technology of Sichuan Province 23MZGC0219Talent Engineering Scientific Research Project of Chengdu University 2081923037
6 · The paper itself

Abstract

backgroundDendrobium officinale Kimura et Migo (D. officinale) is a well-known traditional Chinese medicine with high content polysaccharides in stems. The SWEET (Sugars Will Eventually be Exported Transporters) family is a novel class of sugar transporters mediating sugar translocation among adjacent cells of plants. The expression patterns of SWEETs and whether they are associated with stress response in D. officinale remains uncovered.

resultsHere, 25 SWEET genes were screened out from D. officinale genome, most of which typically contained seven transmembrane domains (TMs) and harbored two conserved MtN3/saliva domains. Using multi-omics data and bioinformatic approaches, the evolutionary relationship, conserved motifs, chromosomal location, expression patterns, correlationship and interaction network were further analyzed. DoSWEETs were intensively located in nine chromosomes. Phylogenetic analysis revealed that DoSWEETs were divided into four clades, and conserved motif 3 specifically existed in DoSWEETs from clade II. Different tissue-specific expression patterns of DoSWEETs suggested the division of their roles in sugar transport. In particular, DoSWEET5b, 5c, and 7d displayed relatively high expression levels in stems. DoSWEET2b and 16 were significantly regulated under cold, drought, and MeJA treatment, which were further verified using RT-qPCR. Correlation analysis and interaction network prediction discovered the internal relationship of DoSWEET family.

conclusionsTaken together, the identification and analysis of the 25 DoSWEETs in this study provide basic information for further functional verification in D. officinale.

Indexed as

DendrobiumBiological TransportGenes, PlantMembrane Transport ProteinsPhylogenyPlant ProteinsMembrane Transport ProteinsPlant ProteinsBiotic and abiotic stressExpression patternPolysaccharidesStemSugar transporter

Identifiers

PMID37415124
PMCPMC10324200
OpenAlexW4383375512

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.