Evidence map›Paper›PMID 37414880›Full record

ArticleNature chemistry2023

Design of allosteric sites into rotary motor V

Takahiro Kosugi, Tatsuya Iida, Mikio Tanabe, Ryota Iino, Nobuyasu Koga

Open access · hybridAbstract read
In one paragraph

Article in Nature chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. De novo design of ATPase based on a blueprint optimized for harboring the P-loop motif.Protein science : a publication of the Protein Society · 2025
    Article
  3. Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Takahiro KosugiResearch Center of Integrative Molecular Systems (CIMoS), Institute for Molecular Science (IMS), National Institutes of Natural Sciences (NINS), Okazaki, Japan. takahirokosugi@ims.ac.jp.ORCID 0000-0002-6289-5319
Tatsuya IidaDepartment of Life and Coordination-Complex Molecular Science, Institute for Molecular Science (IMS), National Institutes of Natural Sciences (NINS), Okazaki, Japan.ORCID 0000-0003-0655-7937
Mikio TanabeStructural Biology Research Center, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Japan.ORCID 0000-0002-4096-6075
Ryota IinoDepartment of Life and Coordination-Complex Molecular Science, Institute for Molecular Science (IMS), National Institutes of Natural Sciences (NINS), Okazaki, Japan.ORCID 0000-0003-0110-5704
Nobuyasu KogaResearch Center of Integrative Molecular Systems (CIMoS), Institute for Molecular Science (IMS), National Institutes of Natural Sciences (NINS), Okazaki, Japan. nkoga@protein.osaka-u.ac.jp.ORCID 0000-0001-8457-0809
National Institutes of Natural Sciences · JPHigh Energy Accelerator Research Organization · JP

Funding

Japan Agency for Medical Research and Development (AMED) BINDS0471MEXT | Japan Society for the Promotion of Science (JSPS) 18H05420MEXT | Japan Society for the Promotion of Science (JSPS) 18H05424MEXT | JST | Precursory Research for Embryonic Science and Technology (PRESTO) JPMJPR13ADMEXT | JST | Precursory Research for Embryonic Science and Technology (PRESTO) JPMJPR20E6
6 · The paper itself

Abstract

Allostery produces concerted functions of protein complexes by orchestrating the cooperative work between the constituent subunits. Here we describe an approach to create artificial allosteric sites in protein complexes. Certain protein complexes contain subunits with pseudo-active sites, which are believed to have lost functions during evolution. Our hypothesis is that allosteric sites in such protein complexes can be created by restoring the lost functions of pseudo-active sites. We used computational design to restore the lost ATP-binding ability of the pseudo-active site in the B subunit of a rotary molecular motor, V

Indexed as

Vacuolar Proton-Translocating ATPasesAdenosine TriphosphateAllosteric SiteBinding SitesCatalytic DomainModels, MolecularAdenosine TriphosphateVacuolar Proton-Translocating ATPases

Identifiers

PMID37414880
PMCPMC10624635
OpenAlexW4383371601

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.