Evidence map›Paper›PMID 37414788›Full record

ArticleScientific reports2023

Application of ultrasensitive digital ELISA for p24 enables improved evaluation of HIV-1 reservoir diversity and growth kinetics in viral outgrowth assays.

Yury V Kuzmichev, Carol Lackman-Smith, Sonia Bakkour, Ann Wiegand, Michael J Bale, Andrew Musick, Wendy Bernstein, Naomi Aronson, Julie Ake, Sodsai Tovanabutra and 6 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 1 country.

Yury V KuzmichevDivision of Microbiology and Immunology, Emory National Primate Research Center, Emory University, Atlanta, GA, USA. yury.v.kuzmichev@emory.edu.
Carol Lackman-SmithDepartment of Infectious Disease Research, Southern Research, Frederick, MD, USA.
Sonia BakkourVitalant Research Institute, San Francisco, CA, USA.
Ann WiegandHIV Dynamics and Replication Program, NCI at Frederick, NIH, Frederick, MD, USA.
Michael J BaleHIV Dynamics and Replication Program, NCI at Frederick, NIH, Frederick, MD, USA.
Andrew MusickHIV Dynamics and Replication Program, NCI at Frederick, NIH, Frederick, MD, USA.
Wendy BernsteinUniformed Services University, Bethesda, MD, USA.
Naomi AronsonUniformed Services University, Bethesda, MD, USA.
Julie AkeU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
Sodsai TovanabutraU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
Mars StoneVitalant Research Institute, San Francisco, CA, USA.
Roger G PtakDepartment of Infectious Disease Research, Southern Research, Frederick, MD, USA.
Mary F KearneyHIV Dynamics and Replication Program, NCI at Frederick, NIH, Frederick, MD, USA.
Michael P BuschVitalant Research Institute, San Francisco, CA, USA.
Elizabeth R WonderlichDepartment of Infectious Disease Research, Southern Research, Frederick, MD, USA.
Deanna A KulpaDivision of Microbiology and Immunology, Emory National Primate Research Center, Emory University, Atlanta, GA, USA. deanna.kulpa@emory.edu.
Southern Research Institute · USUniversity of California, San Francisco · USUniformed Services University of the Health Sciences · USWalter Reed Army Institute of Research · USCornell University · USEmory University · US

Funding

ERASE HIV: Enterprise for Research and Advancements to Stop and Eradicate HIVUM1AI164562 · NIAID · EMORY UNIVERSITY · PI Deanna A Kulpa, Mirko Paiardini · 2021 to 2026
$30.0M
DATA CENTER FOR EPIDEMIOLOGIC INVESTIGATIONS OF HIVN01AI005072 · NIAID · NEW ENGLAND RESEARCH INSTITUTES, INC. · PI MCKINLAY, SONJA M · 1990 to 1994
–
NIAID NIH HHS HHSN272201500017CNIAID NIH HHS UM1 AI164562NIAID NIH HHS Y01 AI005072
6 · The paper itself

Abstract

The advent of combined antiretroviral therapy (cART) has been instrumental in controlling HIV-1 replication and transmission and decreasing associated morbidity and mortality. However, cART alone is not able to cure HIV-1 due to the presence of long-lived, latently infected immune cells, which re-seed plasma viremia when cART is interrupted. Assessment of HIV-cure strategies using ex vivo culture methods for further understanding of the diversity of reactivated HIV, viral outgrowth, and replication dynamics are enhanced using ultrasensitive digital ELISA based on single-molecule array (Simoa) technology to increase the sensitivity of endpoint detection. In viral outgrowth assays (VOA), exponential HIV-1 outgrowth has been shown to be dependent upon initial virus burst size surpassing a critical growth threshold of 5100 HIV-1 RNA copies. Here, we show an association between ultrasensitive HIV-1 Gag p24 concentrations and HIV-1 RNA copy number that characterize viral dynamics below the exponential replication threshold. Single-genome sequencing (SGS) revealed the presence of multiple identical HIV-1 sequences, indicative of low-level replication occurring below the threshold of exponential outgrowth early during a VOA. However, SGS further revealed diverse related HIV variants detectable by ultrasensitive methods that failed to establish exponential outgrowth. Overall, our data suggest that viral outgrowth occurring below the threshold necessary for establishing exponential growth in culture does not preclude replication competence of reactivated HIV, and ultrasensitive detection of HIV-1 p24 may provide a method to detect previously unquantifiable variants. These data strongly support the use of the Simoa platform in a multi-prong approach to measuring latent viral burden and efficacy of therapeutic interventions aimed at an HIV-1 cure.

Indexed as

HIV-1HIV InfectionsHIV SeropositivityCD4-Positive T-LymphocytesEnzyme-Linked Immunosorbent AssayHIV Core Protein p24HumansKineticsRNAViral LoadVirus LatencyHIV Core Protein p24RNA

Identifiers

PMID37414788
PMCPMC10326067
OpenAlexW4383342986

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.