Evidence map›Paper›PMID 37414528›Full record

ArticleLife science alliance2023

Characterizing control of memory CD8 T cell differentiation by BTB-ZF transcription factor Zbtb20.

Nicholas K Preiss, Yasmin Kamal, Owen M Wilkins, Chenyang Li, Fred W Kolling, Heidi W Trask, Young-Kwang Usherwood, Chao Cheng, Hildreth R Frost, Edward J Usherwood

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Nicholas K PreissMicrobiology and Immunology Department, Geisel School of Medicine at Dartmouth, Lebanon, NH, USA.
Yasmin KamalDepartment of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID 0000-0003-4423-7280
Owen M WilkinsDepartment of Biomedical Data Science, Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.ORCID 0000-0002-0882-9484
Chenyang LiGenomic Medicine Department, University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID 0000-0001-8109-9388
Fred W KollingGenomics and Molecular Biology Shared Resource, Dartmouth Cancer Center, Geisel School of Medicine, Lebanon, NH, USA.
Heidi W TraskGenomics and Molecular Biology Shared Resource, Dartmouth Cancer Center, Geisel School of Medicine, Lebanon, NH, USA.
Young-Kwang UsherwoodMicrobiology and Immunology Department, Geisel School of Medicine at Dartmouth, Lebanon, NH, USA.
Chao ChengDepartment of Medicine, Baylor College of Medicine, Houston, TX, USA.
Hildreth R FrostDepartment of Biomedical Data Science, Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.
Edward J UsherwoodMicrobiology and Immunology Department, Geisel School of Medicine at Dartmouth, Lebanon, NH, USA Edward.J.Usherwood@Dartmouth.EDU.ORCID 0000-0002-5611-9700
Dartmouth College · USBaylor College of Medicine · USBrigham and Women's Hospital · USThe University of Texas MD Anderson Cancer Center · US

Funding

Translational Engineering in Cancer (TEC)P30CA023108 · NCI · DARTMOUTH COLLEGE · PI Fred W Kolling IV · 1985 to 2026
$91.3M
Zhao - Proj 2P20GM130454 · NIGMS · DARTMOUTH COLLEGE · PI Li Song · 2019 to 2026
$27.2M
Understanding the role of RNA-binding protein mutations in cancerP20GM113132 · NIGMS · DARTMOUTH COLLEGE · PI MADDEN, DEAN R · 2016 to 2025
$25.9M
IMMUNOBIOLOGY OF MYELOID AND LYMPHOID CELLST32AI007363 · NIAID · DARTMOUTH COLLEGE · PI Claudia V Jakubzick · 1990 to 2026
$9.5M
Dissecting immune surveillance to gammaherpesvirusesR01AI155015 · NIAID · DARTMOUTH COLLEGE · PI USHERWOOD, EDWARD J · 2020 to 2024
$2.9M
Exploiting a novel regulator of immunometabolism to enhance immunotherapyR01CA257954 · NCI · DARTMOUTH COLLEGE · PI Edward J Usherwood · 2022 to 2026
$2.4M
Gene set analysis of single cell genomicsR35GM146586 · NIGMS · DARTMOUTH COLLEGE · PI Hildreth Frost · 2022 to 2026
$2.0M
Host microRNA control of gammaherpesvirus latencyR01AI122854 · NIAID · DARTMOUTH COLLEGE · PI USHERWOOD, EDWARD J · 2016 to 2020
$2.0M
Cancer-specific gene set testingR21CA253408 · NCI · DARTMOUTH COLLEGE · PI FROST, HILDRETH · 2020 to 2020
$451k
Acquisition of the NextSeq2000 Sequencing platform to Increase Next Generation Sequencing Throughput While Reducing Costs at DartmouthS10OD030242 · OD · DARTMOUTH COLLEGE · PI KOLLING IV, FRED W · 2021 to 2021
$321k
10X Genomics Chromium Single-cell Sequencing to Expand Research At DartmouthS10OD025235 · OD · DARTMOUTH COLLEGE · PI TOMLINSON, CRAIG R · 2018 to 2018
$125k
NCI NIH HHS P30 CA023108NCI NIH HHS R01 CA257954NCI NIH HHS R21 CA253408NIAID NIH HHS R01 AI122854NIAID NIH HHS R01 AI155015NIAID NIH HHS T32 AI007363NIGMS NIH HHS P20 GM113132NIGMS NIH HHS P20 GM130454NIGMS NIH HHS R35 GM146586NIH HHS S10 OD025235NIH HHS S10 OD030242
6 · The paper itself

Abstract

Members of the BTB-ZF transcription factor family regulate the immune system. Our laboratory identified that family member Zbtb20 contributes to the differentiation, recall responses, and metabolism of CD8 T cells. Here, we report a characterization of the transcriptional and epigenetic signatures controlled by Zbtb20 at single-cell resolution during the effector and memory phases of the CD8 T cell response. Without Zbtb20, transcriptional programs associated with memory CD8 T cell formation were up-regulated throughout the CD8 T response. A signature of open chromatin was associated with genes controlling T cell activation, consistent with the known impact on differentiation. In addition, memory CD8 T cells lacking Zbtb20 were characterized by open chromatin regions with overrepresentation of AP-1 transcription factor motifs and elevated RNA- and protein-level expressions of the corresponding AP-1 components. Finally, we describe motifs and genomic annotations from the DNA targets of Zbtb20 in CD8 T cells identified by cleavage under targets and release under nuclease (CUT&RUN). Together, these data establish the transcriptional and epigenetic networks contributing to the control of CD8 T cell responses by Zbtb20.

Indexed as

Gene Expression RegulationTranscription Factor AP-1CD8-Positive T-LymphocytesCell DifferentiationChromatinChromatinTranscription Factor AP-1

Identifiers

PMID37414528
PMCPMC10326419
OpenAlexW4383484348

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.