Evidence map›Paper›PMID 37410280›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

HistoSnap: A Novel Software Tool to Extract m/z-Specific Images from Large MSHC Datasets.

Kenneth Verheggen, Nivedita Bhattacharya, Marthe Verhaert, Bram Goossens, Raf Sciot, Peter Verhaert

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Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
3.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Kenneth VerheggenProteoFormiX, Beerse, Belgium.
Nivedita BhattacharyaProteoFormiX, Beerse, Belgium.
Marthe VerhaertProteoFormiX, Beerse, Belgium.
Bram GoossensProteoFormiX, Beerse, Belgium.
Raf SciotProteoFormiX, Beerse, Belgium.
Peter VerhaertProteoFormiX, Beerse, Belgium.
Institut Jules Bordet · BEKU Leuven · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We describe an informatics tool for comfortable browsing through highly complex, multi-gigabyte mass spectrometry histochemistry (MSHC) datasets, via clever ion-specific image extraction.The package is developed particularly for the untargeted localization/discovery of biomolecules such as endogenous (neuro)secretory peptides on histological sections of biobanked formaldehyde-fixed paraffin-embedded (FFPE) samples straight from tissue banks.Atmospheric pressure-MALDI-Orbitrap MSHC data of sections through human pituitary adenomas in which two well-known human neuropeptides are detected are used as an example to demonstrate the key features of the novel software, named HistoSnap.

Indexed as

FormaldehydePeptidesHistocytochemistryHumansParaffin EmbeddingSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationSpectrum AnalysisTissue FixationFormaldehydePeptidesHistoSnapMass spectrometry histochemistryMolecule-specific imagesMSHC(neuro)secretory peptides

Identifiers

PMID37410280
OpenAlexW4383301658

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.