Evidence map›Paper›PMID 37409937›Full record

ArticleMicrobiology spectrum2023

Molecular Diversity of Human Respiratory Syncytial Virus before and during the COVID-19 Pandemic in Two Neighboring Japanese Cities.

Takashi Ono, Koichi Hashimoto, Yohei Kume, Mina Chishiki, Hisao Okabe, Masatoki Sato, Sakurako Norito, Jumpei Aso, Mitsuru Sada, Izumi Mochizuki and 10 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in Microbiology spectrum, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 1 country.

Takashi OnoDepartment of Pediatrics, Fukushima Medical University, Fukushima, Fukushima, Japan.ORCID 0000-0003-4955-6221
Koichi HashimotoDepartment of Pediatrics, Fukushima Medical University, Fukushima, Fukushima, Japan.ORCID 0000-0001-7186-7603
Yohei KumeDepartment of Pediatrics, Fukushima Medical University, Fukushima, Fukushima, Japan.ORCID 0000-0003-2985-1282
Mina ChishikiDepartment of Pediatrics, Fukushima Medical University, Fukushima, Fukushima, Japan.ORCID 0000-0002-0785-7053
Hisao OkabeDepartment of Pediatrics, Fukushima Medical University, Fukushima, Fukushima, Japan.
Masatoki SatoDepartment of Pediatrics, Fukushima Medical University, Fukushima, Fukushima, Japan.
Sakurako NoritoDepartment of Pediatrics, Fukushima Medical University, Fukushima, Fukushima, Japan.
Jumpei AsoDepartment of Respiratory Medicine, Kyorin University School of Medicine, Tokyo, Japan.
Mitsuru SadaDepartment of Respiratory Medicine, Kyorin University School of Medicine, Tokyo, Japan.ORCID 0000-0002-1088-2954
Izumi MochizukiDepartment of Pediatrics, Ohara General Hospital, Fukushima, Fukushima, Japan.
Fumi MashiyamaDepartment of Pediatrics, Hoshi General Hospital, Koriyama, Fukushima, Japan.
Naohisa IshibashiDepartment of Pediatrics, Ohara General Hospital, Fukushima, Fukushima, Japan.
Shigeo SuzukiDepartment of Pediatrics, Ohara General Hospital, Fukushima, Fukushima, Japan.
Hiroko SakumaDepartment of Pediatrics, Hoshi General Hospital, Koriyama, Fukushima, Japan.
Reiko SuwaDepartment of Virology 3, National Institute of Infectious Diseases, Tokyo, Japan.
Miyuki KawaseDepartment of Virology 3, National Institute of Infectious Diseases, Tokyo, Japan.
Makoto TakedaDepartment of Microbiology, Graduate School of Medicine and Faculty of Medicine, The University of Tokyo, Tokyo, Japan.ORCID 0000-0002-8194-7727
Kazuya ShiratoDepartment of Virology 3, National Institute of Infectious Diseases, Tokyo, Japan.ORCID 0000-0002-3375-9799
Hirokazu KimuraGunma Paz University, Graduate School of Health Sciences, Takasaki, Gunma, Japan.
Mitsuaki HosoyaDepartment of Pediatrics, Fukushima Medical University, Fukushima, Fukushima, Japan.ORCID 0000-0003-1626-3625
Fukushima Medical University · JPNational Institute of Infectious Diseases · JPSeirei Hamamatsu General Hospital · JPChiba-Nishi General Hospital · JPKyorin University · JPGumma Paz College · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human respiratory syncytial viruses (HRSVs) are divided into subgroups A and B, which are further divided based on the nucleotide sequence of the second hypervariable region (HVR) of the attachment glycoprotein (G) gene. Understanding the molecular diversity of HRSV before and during the coronavirus disease 2019 (COVID-19) pandemic can provide insights into the effects of the pandemic on HRSV dissemination and guide vaccine development. Here, we analyzed HRSVs isolated in Fukushima Prefecture from September 2017 to December 2021. Specimens from pediatric patients were collected at two medical institutions in neighboring cities. A phylogenetic tree based on the second HVR nucleotide sequences was constructed using the Bayesian Markov chain Monte Carlo method. HRSV-A (ON1 genotype) and HRSV-B (BA9 genotype) were detected in 183 and 108 specimens, respectively. There were differences in the number of HRSV strains within clusters prevalent at the same time between the two hospitals. The genetic characteristics of HRSVs in 2021 after the COVID-19 outbreak were similar to those in 2019. HRSVs within a cluster may circulate within a region for several years, causing an epidemic cycle. Our findings add to the existing knowledge of the molecular epidemiology of HRSV in Japan.

Indexed as

COVID-19Respiratory Syncytial Virus, HumanRespiratory Syncytial Virus InfectionsBayes TheoremChildCitiesEast Asian PeopleGenetic VariationGenotypeHumansInfantJapanPandemicsPhylogenyevolutionmolecular epidemiologyrespiratory syncytial virus

Identifiers

PMID37409937
PMCPMC10433803
OpenAlexW4383302701

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.