Evidence map›Paper›PMID 37409737›Full record

ArticleACS applied materials & interfaces2023

All-Covalent Nuclease-Resistant and Hydrogel-Tethered DNA Hairpin Probes Map pN Cell Traction Forces.

Sk Aysha Rashid, Yixiao Dong, Hiroaki Ogasawara, Maia Vierengel, Mark Edoho Essien, Khalid Salaita

Open access · hybridAbstract read
In one paragraph

Article in ACS applied materials & interfaces, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Traction Force Microscopy with DNA FluoroCubes.Langmuir : the ACS journal of surfaces and colloids · 2026
    Article
  3. Detection of Mesenchymal Stem Cell Aging Using an Integrin Mechano-Probe.Annals of the New York Academy of Sciences · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Decoy DNA Protects Molecular Tension Probes from DNase Degradation.Angewandte Chemie (International ed. in English) · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Sk Aysha RashidDepartment of Chemistry, Emory University, Atlanta, Georgia 30322, United States.
Yixiao DongDepartment of Chemistry, Emory University, Atlanta, Georgia 30322, United States.
Hiroaki OgasawaraDepartment of Chemistry, Emory University, Atlanta, Georgia 30322, United States.ORCID 0000-0001-8462-562X
Maia VierengelDepartment of Chemistry, Emory University, Atlanta, Georgia 30322, United States.
Mark Edoho EssienDepartment of Chemistry, Emory University, Atlanta, Georgia 30322, United States.ORCID 0000-0003-2638-1107
Khalid SalaitaDepartment of Chemistry, Emory University, Atlanta, Georgia 30322, United States.ORCID 0000-0003-4138-3477
Emory University · USGeorgia Institute of Technology · US

Funding

Equipment Supplement: Cell sorting flow cytometry to support the BTDDRM1GM145394 · NIGMS · EMORY UNIVERSITY · PI Khalid S. Salaita · 2023 to 2026
$5.6M
Molecular imaging technologies for mechanobiologyR01GM131099 · NIGMS · EMORY UNIVERSITY · PI MATTHEYSES, ALEXA LYNN, SALAITA, KHALID S. · 2019 to 2022
$1.6M
Developing a Bioanalytical Toolkit to Study the Mechanobiology of Juxtacrine SignalingR01GM124472 · NIGMS · EMORY UNIVERSITY · PI SALAITA, KHALID S. · 2017 to 2020
$1.5M
Mechano-ID for tagging immune cellsR01AI172452 · NIAID · EMORY UNIVERSITY · PI Khalid S. Salaita · 2023 to 2026
$1.4M
Mechano-ID for tagging immune cellsR56AI172452 · NIAID · EMORY UNIVERSITY · PI SALAITA, KHALID S. · 2022 to 2022
$190k
NIAID NIH HHS R01 AI172452NIAID NIH HHS R56 AI172452NIGMS NIH HHS R01 GM124472NIGMS NIH HHS R01 GM131099NIGMS NIH HHS RM1 GM145394
6 · The paper itself

Abstract

Cells sense and respond to the physical properties of their environment through receptor-mediated signaling, a process known as mechanotransduction, which can modulate critical cellular functions such as proliferation, differentiation, and survival. At the molecular level, cell adhesion receptors, such as integrins, transmit piconewton (pN)-scale forces to the extracellular matrix, and the magnitude of the force plays a critical role in cell signaling. The most sensitive approach to measuring integrin forces involves DNA hairpin-based sensors, which are used to quantify and map forces in living cells. Despite the broad use of DNA hairpin sensors to study a variety of mechanotransduction processes, these sensors are typically anchored to rigid glass slides, which are orders of magnitude stiffer than the extracellular matrix and hence modulate native biological responses. Here, we have developed nuclease-resistant DNA hairpin probes that are all covalently tethered to PEG hydrogels to image cell traction forces on physiologically relevant substrate stiffness. Using HeLa cells as a model cell line, we show that the molecular forces transmitted by integrins are highly sensitive to the bulk modulus of the substrate, and cells cultured on the 6 and 13 kPa gels produced a greater number of hairpin unfolding events compared to the 2 kPa substrates. Tension signals are spatially colocalized with pY118-paxillin, confirming focal adhesion-mediated probe opening. Additionally, we found that integrin forces are greater than 5.8 pN but less than 19 pN on 13 kPa gels. This work provides a general strategy to integrate molecular tension probes into hydrogels, which can better mimic in vivo mechanotransduction.

Indexed as

HydrogelsMechanotransduction, CellularCell AdhesionDNADNA ProbesHeLa CellsHumansIntegrinsReceptors, Cell SurfaceTractionDNADNA ProbesHydrogelsIntegrinsReceptors, Cell SurfaceDNA hairpin sensorsDNA tension probeshydrogelintegrin mechanosensingmechanobiologymechanotransduction

Identifiers

PMID37409737
PMCPMC10360067
OpenAlexW4383302263

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.