Evidence map›Paper›PMID 37409306›Full record

ArticleFrontiers in plant science2023

Changes in

Andrea Pagano, Laura Kunz, Antje Dittmann, Susana De Sousa Araújo, Anca Macovei, Shraddha Shridhar Gaonkar, Federico Sincinelli, Hisham Wazeer, Alma Balestrazzi

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Seed longevity and genome damage.Bioscience reports · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Andrea PaganoDepartment of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy.
Laura KunzFunctional Genomics Center Zurich (FGCZ), University of Zurich/Eidgenossische Technische Hochschule (ETH) Zurich, Zurich, Switzerland.
Antje DittmannFunctional Genomics Center Zurich (FGCZ), University of Zurich/Eidgenossische Technische Hochschule (ETH) Zurich, Zurich, Switzerland.
Susana De Sousa AraújoAssociation BLC3 - Campus of Technology and Innovation, Centre BIO R&D Unit | North Delegation, Macedo de Cavaleiros, Portugal.
Anca MacoveiDepartment of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy.
Shraddha Shridhar GaonkarDepartment of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy.
Federico SincinelliDepartment of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy.
Hisham WazeerDepartment of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy.
Alma BalestrazziDepartment of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy.
University of Pavia · ITETH Zurich · CHUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Several molecular aspects underlying the seed response to priming and the resulting vigor profile are still poorly understood. Mechanisms involved in genome maintenance deserve attention since the balance between stimulation of germination and DNA damage accumulation versus active repair is a key determinant for designing successful seed priming protocols. Methods: Changes in the Medicago truncatula seed proteome were investigated in this study, using discovery mass spectrometry and label-free quantification, along the rehydration-dehydration cycle of a standard vigorization treatment (hydropriming plus dry-back), and during post-priming imbibition. Resuts and discussion: From 2056 to 2190 proteins were detected in each pairwise comparison, among which six were differentially accumulated and 36 were detected only in one condition. The following proteins were selected for further investigation: MtDRP2B (DYNAMIN-RELATED PROTEIN), MtTRXm4 (THIOREDOXIN m4), and MtASPG1 (ASPARTIC PROTEASE IN GUARD CELL 1) showing changes in seeds under dehydration stress; MtITPA (INOSINE TRIPHOSPHATE PYROPHOSPHORYLASE), MtABA2 (ABSCISIC ACID DEFICIENT 2), MtRS2Z32 (SERINE/ARGININE-RICH SPLICING FACTOR RS2Z32), and MtAQR (RNA HELICASE AQUARIUS) that were differentially regulated during post-priming imbibition. Changes in the corresponding transcript levels were assessed by qRT-PCR. In animal cells, ITPA hydrolyses 2'-deoxyinosine triphosphate and other inosine nucleotides, preventing genotoxic damage. A proof of concept was performed by imbibing primed and control M. truncatula seeds in presence/absence of 20 mM 2'-deoxyinosine (dI). Results from comet assay highlighted the ability of primed seeds to cope with dI-induced genotoxic damage. The seed repair response was assessed by monitoring the expression profiles of MtAAG (ALKYL-ADENINE DNA GLYCOSILASE) and MtEndoV (ENDONUCLEASE V) genes that participate in the repair of the mismatched I:T pair in BER (base excision repair) and AER (alternative excision repair) pathways, respectively.

Indexed as

2’-deoxyinosinecomet assayhydropriminginosine triphosphate pyrophosphorylaseMedicago truncatulaseed proteome

Identifiers

PMID37409306
PMCPMC10319343
OpenAlexW4380628555

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.