Evidence map›Paper›PMID 37409049›Full record

ArticlePatterns (New York, N.Y.)2023

Information about immune cell proportions and tumor stage improves the prediction of recurrence in patients with colorectal cancer.

JungHo Kong, Jinho Kim, Donghyo Kim, Kwanghwan Lee, Juhun Lee, Seong Kyu Han, Inhae Kim, Seongsu Lim, Minhyuk Park, Seungho Shin and 7 more

Abstract read
In one paragraph

Article in Patterns (New York, N.Y.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

JungHo KongDepartment of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Korea.
Jinho KimPrecision Medicine Center, Future Innovation Research Division, Seoul National University Bundang Hospital, Seongnam 13620, Korea.
Donghyo KimDepartment of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Korea.
Kwanghwan LeeDepartment of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Korea.
Juhun LeeDepartment of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Korea.
Seong Kyu HanDepartment of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Korea.
Inhae KimInstitute for Future Medicine, Samsung Medical Center, Seoul 06351, Korea.
Seongsu LimSchool of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, Pohang 37673, Korea.
Minhyuk ParkDepartment of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Korea.
Seungho ShinGENINUS, Inc., Seoul 05836, Korea.
Woo Yong LeeDepartment of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 06351, Korea.
Seong Hyeon YunDepartment of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 06351, Korea.
Hee Cheol KimDepartment of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 06351, Korea.
Hye Kyung HongInstitute for Future Medicine, Samsung Medical Center, Seoul 06351, Korea.
Yong Beom ChoDepartment of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 06351, Korea.
Donghyun ParkGENINUS, Inc., Seoul 05836, Korea.
Sanguk KimDepartment of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Predicting cancer recurrence is essential to improving the clinical outcomes of patients with colorectal cancer (CRC). Although tumor stage information has been used as a guideline to predict CRC recurrence, patients with the same stage show different clinical outcomes. Therefore, there is a need to develop a method to identify additional features for CRC recurrence prediction. Here, we developed a network-integrated multiomics (NIMO) approach to select appropriate transcriptome signatures for better CRC recurrence prediction by comparing the methylation signatures of immune cells. We validated the performance of the CRC recurrence prediction based on two independent retrospective cohorts of 114 and 110 patients. Moreover, to confirm that the prediction was improved, we used both NIMO-based immune cell proportions and TNM (tumor, node, metastasis) stage data. This work demonstrates the importance of (1) using both immune cell composition and TNM stage data and (2) identifying robust immune cell marker genes to improve CRC recurrence prediction.

Indexed as

cancer recurrencecell deconvolutioncolorectal cancerimmune cell proportionmachine learningmultiomicsPPI networkTNM stagetumor microenvironment

Identifiers

PMID37409049
PMCPMC10318368

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.