Evidence map›Paper›PMID 37408731›Full record

ArticleGigaByte (Hong Kong, China)2023

Genome assembly of the hybrid grapevine

Sagar Patel, Zachary N Harris, Jason P Londo, Allison Miller, Anne Fennell

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in GigaByte (Hong Kong, China), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Genome assembly of the hybrid grapevineGigaByte (Hong Kong, China) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sagar PatelSaint Louis University, Department of Biology, 3507 Laclede Ave, St. Louis, MO 63103, USA.ORCID https://orcid.org/0000-0003-4896-2658
Zachary N HarrisSaint Louis University, Department of Biology, 3507 Laclede Ave, St. Louis, MO 63103, USA.ORCID https://orcid.org/0000-0001-8299-3074
Jason P LondoSchool of Integrative Plant Science, Cornell University, 630 W. North Street, Geneva, NY 14456, USA.ORCID https://orcid.org/0000-0003-0535-4820
Allison MillerSaint Louis University, Department of Biology, 3507 Laclede Ave, St. Louis, MO 63103, USA.ORCID https://orcid.org/0000-0002-2722-9361
Anne FennellSouth Dakota State University, Agronomy, Horticulture and Plant Science Department and BioSNTR, Brookings, SD 57006, USA.ORCID https://orcid.org/0000-0002-4234-6419

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

'Chambourcin' is a French-American interspecific hybrid grape grown in the eastern and midwestern United States and used for making wine. Few genomic resources are available for hybrid grapevines like 'Chambourcin'. Here, we assembled the genome of 'Chambourcin' using PacBio HiFi long-read, Bionano optical map, and Illumina short-read sequencing technologies. We generated an assembly for 'Chambourcin' with 26 scaffolds, with an N50 length of 23.3 Mb and an estimated BUSCO completeness of 97.9%. We predicted 33,791 gene models and identified 16,056 common orthologs between 'Chambourcin',

Identifiers

PMID37408731
PMCPMC10318349

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.