Evidence map›Paper›PMID 37407841›Full record

SynthesisJournal of digital imaging2023

Reproducibility of Deep Learning Algorithms Developed for Medical Imaging Analysis: A Systematic Review.

Mana Moassefi, Pouria Rouzrokh, Gian Marco Conte, Sanaz Vahdati, Tianyuan Fu, Aylin Tahmasebi, Mira Younis, Keyvan Farahani, Amilcare Gentili, Timothy Kline and 6 more

Abstract readSystematic Review
In one paragraph

Synthesis in Journal of digital imaging, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
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  12. Review
  13. Review
  14. Artificial intelligence uncertainty quantification in radiotherapy applications - A scoping review.Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology · 2024
    Article
  15. Checklist for Reproducibility of Deep Learning in Medical Imaging.Journal of imaging informatics in medicine · 2024
    Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Mana MoassefiArtificial Intelligence Lab, Department of Radiology, Mayo Clinic, Rochester, MN, USA. Moassefi.mana@Mayo.edu.
Pouria RouzrokhArtificial Intelligence Lab, Department of Radiology, Mayo Clinic, Rochester, MN, USA.
Gian Marco ConteArtificial Intelligence Lab, Department of Radiology, Mayo Clinic, Rochester, MN, USA.
Sanaz VahdatiArtificial Intelligence Lab, Department of Radiology, Mayo Clinic, Rochester, MN, USA.
Tianyuan FuDepartment of Radiology, University Hospitals Cleveland, Cleveland, OH, USA.
Aylin TahmasebiDepartment of Radiology, Thomas Jefferson University, Philadelphia, PA, USA.
Mira YounisCleveland Clinic Children's, Cleveland, OH, USA.
Keyvan FarahaniNational Cancer Institute, National Institutes of Health, Bethesda, MA, USA.
Amilcare GentiliDepartment of Radiology, University of California, San Diego, CA, USA.
Timothy KlineDepartment of Radiology, Mayo Clinic, Rochester, MN, USA.
Felipe C KitamuraDasaInova, Diagnósticos da América S.A, São Paulo, Brazil.
Yuankai HuoDepartment of Electrical Engineering & Computer Science, Vanderbilt University, Nashville, TN, USA.
Shiba KuanarArtificial Intelligence Lab, Department of Radiology, Mayo Clinic, Rochester, MN, USA.
Khaled YounisPhillips Research North America, Cambridge, MD, USA.
Bradley J EricksonArtificial Intelligence Lab, Department of Radiology, Mayo Clinic, Rochester, MN, USA.
Shahriar FaghaniArtificial Intelligence Lab, Department of Radiology, Mayo Clinic, Rochester, MN, USA. Faghani.shahriar@mayo.edu.ORCID http://orcid.org/0000-0003-3275-2971

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since 2000, there have been more than 8000 publications on radiology artificial intelligence (AI). AI breakthroughs allow complex tasks to be automated and even performed beyond human capabilities. However, the lack of details on the methods and algorithm code undercuts its scientific value. Many science subfields have recently faced a reproducibility crisis, eroding trust in processes and results, and influencing the rise in retractions of scientific papers. For the same reasons, conducting research in deep learning (DL) also requires reproducibility. Although several valuable manuscript checklists for AI in medical imaging exist, they are not focused specifically on reproducibility. In this study, we conducted a systematic review of recently published papers in the field of DL to evaluate if the description of their methodology could allow the reproducibility of their findings. We focused on the Journal of Digital Imaging (JDI), a specialized journal that publishes papers on AI and medical imaging. We used the keyword "Deep Learning" and collected the articles published between January 2020 and January 2022. We screened all the articles and included the ones which reported the development of a DL tool in medical imaging. We extracted the reported details about the dataset, data handling steps, data splitting, model details, and performance metrics of each included article. We found 148 articles. Eighty were included after screening for articles that reported developing a DL model for medical image analysis. Five studies have made their code publicly available, and 35 studies have utilized publicly available datasets. We provided figures to show the ratio and absolute count of reported items from included studies. According to our cross-sectional study, in JDI publications on DL in medical imaging, authors infrequently report the key elements of their study to make it reproducible.

Indexed as

Artificial IntelligenceDiagnostic ImagingAlgorithmsCross-Sectional StudiesHumansReproducibility of ResultsArtificial intelligenceDeep learningMachine learningMedical imagingReproducibility

Identifiers

PMID37407841
PMCPMC10501962

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.