Evidence map›Paper›PMID 37407562›Full record

ArticleNature communications2023

UHRF1 is a mediator of KRAS driven oncogenesis in lung adenocarcinoma.

Kaja Kostyrko, Marta Román, Alex G Lee, David R Simpson, Phuong T Dinh, Stanley G Leung, Kieren D Marini, Marcus R Kelly, Joshua Broyde, Andrea Califano and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Kaja KostyrkoDivision of Oncology, Department of Pediatrics, University of California, San Francisco, San Francisco, CA, USA. kaja.kostyrko@ucsf.edu.ORCID http://orcid.org/0000-0002-2842-4089
Marta RománDivision of Oncology, Department of Pediatrics, University of California, San Francisco, San Francisco, CA, USA.
Alex G LeeDivision of Oncology, Department of Pediatrics, University of California, San Francisco, San Francisco, CA, USA.
David R SimpsonDivision of Oncology, Department of Pediatrics, University of California, San Francisco, San Francisco, CA, USA.
Phuong T DinhDivision of Oncology, Department of Pediatrics, University of California, San Francisco, San Francisco, CA, USA.
Stanley G LeungDivision of Oncology, Department of Pediatrics, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-9470-8760
Kieren D MariniDivision of Oncology, Department of Pediatrics, University of California, San Francisco, San Francisco, CA, USA.
Marcus R KellyBaxter Laboratory, Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Joshua BroydeDepartment of Systems Biology, Columbia University, New York, NY, USA.
Andrea CalifanoDepartment of Systems Biology, Columbia University, New York, NY, USA.
Peter K JacksonBaxter Laboratory, Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-1742-2539
E Alejandro Sweet-CorderoDivision of Oncology, Department of Pediatrics, University of California, San Francisco, San Francisco, CA, USA. alejandro.sweet-cordero@ucsf.edu.ORCID http://orcid.org/0000-0002-9787-9351
University of California, San Francisco · USStanford University · USColumbia University · USColumbia University Irving Medical Center · US

Funding

Leveraging innovative technologies in basic and clinical cancer researchT32CA009302 · NCI · STANFORD UNIVERSITY · PI LAURA D ATTARDI, Aaron M Newman · 1985 to 2026
$19.1M
Predicting Cancer Cell Response to Endogenous and Exogenous Perturbations at the Single Cell LevelR35CA197745 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ANDREA CALIFANO · 2015 to 2026
$11.5M
BMI Bioinformatics Training GrantsT32GM067547 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HERNANDEZ, RYAN D. · 2003 to 2022
$6.6M
Using Protein Interaction Networks and Combinatorial Screens to target KRAS driven cancerU01CA199216 · NCI · STANFORD UNIVERSITY · PI BASSIK, MICHAEL C, JACKSON, PETER KENT · 2015 to 2019
$3.2M
High Performance Computing Cluster for Biomedical ResearchS10OD032433 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2023 to 2023
$2.0M
High-performance compute cluster for biomedical computingS10OD012351 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2012 to 2012
$2.0M
Storage System for High Performance ComputingS10OD021764 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2016 to 2016
$600k
NCI NIH HHS R35 CA197745NCI NIH HHS T32 CA009302NCI NIH HHS U01 CA199216NIGMS NIH HHS T32 GM067547NIH HHS S10 OD012351NIH HHS S10 OD021764NIH HHS S10 OD032433
6 · The paper itself

Abstract

KRAS is a frequent driver in lung cancer. To identify KRAS-specific vulnerabilities in lung cancer, we performed RNAi screens in primary spheroids derived from a Kras mutant mouse lung cancer model and discovered an epigenetic regulator Ubiquitin-like containing PHD and RING finger domains 1 (UHRF1). In human lung cancer models UHRF1 knock-out selectively impaired growth and induced apoptosis only in KRAS mutant cells. Genome-wide methylation and gene expression analysis of UHRF1-depleted KRAS mutant cells revealed global DNA hypomethylation leading to upregulation of tumor suppressor genes (TSGs). A focused CRISPR/Cas9 screen validated several of these TSGs as mediators of UHRF1-driven tumorigenesis. In vivo, UHRF1 knock-out inhibited tumor growth of KRAS-driven mouse lung cancer models. Finally, in lung cancer patients high UHRF1 expression is anti-correlated with TSG expression and predicts worse outcomes for patients with KRAS mutant tumors. These results nominate UHRF1 as a KRAS-specific vulnerability and potential target for therapeutic intervention.

Indexed as

Adenocarcinoma of LungCCAAT-Enhancer-Binding ProteinsLung NeoplasmsUbiquitin-Protein LigasesAnimalsCell Transformation, NeoplasticDNA MethylationEpigenesis, GeneticHumansMiceProto-Oncogene Proteins p21(ras)CCAAT-Enhancer-Binding ProteinsKRAS protein, humanProto-Oncogene Proteins p21(ras)Ubiquitin-Protein LigasesUHRF1 protein, humanUhrf1 protein, mouse

Identifiers

PMID37407562
PMCPMC10322837
OpenAlexW4383265245

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.