Evidence map›Paper›PMID 37407546›Full record

ArticleACS nano2023

Modular Protein-DNA Cocrystals as Precise, Programmable Assembly Scaffolds.

Abigail R Orun, Ethan T Shields, Sara Dmytriw, Ananya Vajapayajula, Caroline K Slaughter, Christopher D Snow

Abstract read
In one paragraph

Article in ACS nano, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Crystallographic Study of DNA T-Junction via Crystal Engineering.Angewandte Chemie (International ed. in English) · 2025
    Article
  5. Inverse Design of DNA-Programmable Protein Colloidal Crystals.Journal of the American Chemical Society · 2025
    Article
  6. Article
  7. Programming crystallization kinetics of self-assembled DNA crystals with 5-methylcytosine modification.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Abigail R OrunDepartment of Chemistry, Colorado State University, 1301 Center Ave., Fort Collins, Colorado 80523, United States.ORCID 0000-0003-3090-1363
Ethan T ShieldsDepartment of Biomedical Engineering, Colorado State University, 1376 Campus Delivery, Fort Collins, Colorado 80523, United States.
Sara DmytriwDepartment of Biomedical Engineering, Colorado State University, 1376 Campus Delivery, Fort Collins, Colorado 80523, United States.
Ananya VajapayajulaDepartment of Biomedical Engineering, Colorado State University, 1376 Campus Delivery, Fort Collins, Colorado 80523, United States.ORCID 0000-0003-0343-0594
Caroline K SlaughterDepartment of Cell and Molecular Biology, Colorado State University, Fort Collins, Colorado 80523, United States.
Christopher D SnowDepartment of Chemistry, Colorado State University, 1301 Center Ave., Fort Collins, Colorado 80523, United States.ORCID 0000-0002-7690-3519

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High-precision nanomaterials to entrap DNA-binding molecules are sought after for applications such as controlled drug delivery and scaffold-assisted structural biology. Here, we engineered protein-DNA cocrystals to serve as scaffolds for DNA-binding molecules. The designed cocrystals, isoreticular cocrystals, contain DNA-binding protein and cognate DNA blocks where the DNA-DNA junctions stack end-to-end. Furthermore, the crystal symmetry allows topology preserving (isoreticular) expansion of the DNA stack without breaking protein-protein contacts, hence providing larger solvent channels for guest diffusion. Experimentally, the resulting designed isoreticular cocrystal adopted an interpenetrating

Indexed as

DNABase SequenceCrystallizationDNAcocrystaldesignDNA-binding proteinscaffoldX-ray crystallography

Identifiers

PMID37407546
PMCPMC10373652

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.