Evidence map›Paper›PMID 37406927›Full record

ArticleJournal of molecular biology2023

The Dysferlin C2A Domain Binds PI(4,5)P2 and Penetrates Membranes.

Ethiene Kwok, Shauna C Otto, Patricia Khuu, Andrew P Carpenter, Sara J Codding, Patrick N Reardon, Juan Vanegas, Tanushri M Kumar, Chapman J Kuykendall, Ryan A Mehl and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Plasma membrane repair defect in Alzheimer's disease neurons is driven by the reduced dysferlin expression.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Ethiene KwokDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97331, USA.
Shauna C OttoDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97331, USA.
Patricia KhuuDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97331, USA.
Andrew P CarpenterDepartment of Chemical Engineering, Oregon State University, Corvallis, OR 97331, USA.
Sara J CoddingDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97331, USA.
Patrick N ReardonNMR Facility, Oregon State University, Corvallis, OR 97331, USA.
Juan VanegasDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97331, USA.
Tanushri M KumarDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97331, USA.
Chapman J KuykendallDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97331, USA.
Ryan A MehlDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97331, USA.
Joe BaioDepartment of Chemical Engineering, Oregon State University, Corvallis, OR 97331, USA.
Colin P JohnsonDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97331, USA. Electronic address: colin.johnson@oregonstate.edu.
Oregon State University · US

Funding

The GCE4All Center: Unleashing the Potential of Genetic Code Expansion for Biomedical ResearchRM1GM144227 · NIGMS · OREGON STATE UNIVERSITY · PI RYAN A MEHL · 2022 to 2026
$6.2M
In vivo and in vitro studies of the deafness associated protein otoferlinR01DC014588 · NIDCD · OREGON STATE UNIVERSITY · PI JOHNSON, COLIN P · 2016 to 2020
$1.7M
Acquisition of a 700 MHz NMR SpectrometerS10OD018518 · OD · OREGON STATE UNIVERSITY · PI BARBAR, ELISAR J · 2015 to 2015
$1.3M
NIDCD NIH HHS R01 DC014588NIGMS NIH HHS RM1 GM144227NIH HHS S10 OD018518
6 · The paper itself

Abstract

Dysferlin is a large membrane protein found most prominently in striated muscle. Loss of dysferlin activity is associated with reduced exocytosis, abnormal intracellular Ca2+ and the muscle diseases limb-girdle muscular dystrophy and Miyoshi myopathy. The cytosolic region of dysferlin consists of seven C2 domains with mutations in the C2A domain at the N-terminus resulting in pathology. Despite the importance of Ca2+ and membrane binding activities of the C2A domain for dysferlin function, the mechanism of the domain remains poorly characterized. In this study we find that the C2A domain preferentially binds membranes containing PI(4,5)P2 through an interaction mediated by residues Y23, K32, K33, and R77 on the concave face of the domain. We also found that subsequent to membrane binding, the C2A domain inserts residues on the Ca2+ binding loops into the membrane. Analysis of solution NMR measurements indicate that the domain inhabits two distinct structural states, with Ca2+ shifting the population between states towards a more rigid structure with greater affinity for PI(4,5)P2. Based on our results, we propose a mechanism where Ca

Indexed as

CalciumCalcium-Binding ProteinsDysferlinMembrane ProteinsPhosphatidylinositol 4,5-DiphosphateC2 DomainsProtein BindingCalciumCalcium-Binding ProteinsDysferlinMembrane ProteinsPhosphatidylinositol 4,5-DiphosphateC2 domaincalciumCESTdysferlingenetic code expansion

Identifiers

PMID37406927
PMCPMC10699586
OpenAlexW4382933875

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.