Evidence map›Paper›PMID 37406165›Full record

ArticleJournal of medicinal chemistry2023

Systematic Study of Heteroarene Stacking Using a Congeneric Set of Molecular Glues for Procaspase-6.

Takaya Togo, Linh Tram, Laura G Denton, Xochina ElHilali-Pollard, Jun Gu, Jinglei Jiang, Chenglei Liu, Yan Zhao, Yanlong Zhao, Yinzhe Zheng and 9 more

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. A General Photoredox Platform for the Hydroarylation of Olefins.Journal of the American Chemical Society · 2026
    Article
  2. Making Sense of Heteroatom Effects in π-π Interactions.Journal of the American Chemical Society · 2025
    Article
  3. A Predictive Model for Thiol Reactivity ofJournal of medicinal chemistry · 2025
    Article
  4. Revisiting the Hunter-Sanders Model for π-π Interactions.Journal of the American Chemical Society · 2025
    Article
  5. Aryl Acid-Alcohol Cross-Coupling: C(spJournal of the American Chemical Society · 2025
    Article
  6. Stacking Interactions of Druglike Heterocycles with Nucleobases.Journal of chemical information and modeling · 2025
    Article
  7. Article
  8. Triple Radical Sorting: Aryl-Alkylation of Alkenes.Journal of the American Chemical Society · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Takaya TogoDepartment of Pharmaceutical Chemistry, University of California, 600 16th Street, San Francisco, California 94143, United States.
Linh TramDepartment of Pharmaceutical Chemistry, University of California, 600 16th Street, San Francisco, California 94143, United States.
Laura G DentonDepartment of Chemistry, University of Georgia, Athens, Georgia 30602, United States.
Xochina ElHilali-PollardDepartment of Pharmaceutical Chemistry, University of California, 600 16th Street, San Francisco, California 94143, United States.
Jun GuDepartments of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China.
Jinglei JiangDepartments of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China.
Chenglei LiuDepartments of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China.
Yan ZhaoDepartments of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China.
Yanlong ZhaoDepartments of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China.
Yinzhe ZhengDepartments of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China.
Yunping ZhengDepartments of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China.
Jingjing YangDepartments of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China.ORCID 0000-0003-0746-1953
Panpan FanDepartments of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China.
Michelle R ArkinDepartment of Pharmaceutical Chemistry, University of California, 600 16th Street, San Francisco, California 94143, United States.ORCID 0000-0002-9366-6770
Harri HärmäDepartment of Chemistry, University of Turku, 20500 Turku, Finland.ORCID 0000-0002-8936-039X
Deqian SunDepartments of Chemistry and Biology, Viva Biotech, Pu Dong New Area, 201203 Shanghai, China.
Stacie S CananDepartments of Chemistry and Structural Biology, Elgia Therapeutics, La Jolla, California 92037, United States.ORCID 0000-0002-2363-9590
Steven E WheelerDepartment of Chemistry, University of Georgia, Athens, Georgia 30602, United States.ORCID 0000-0001-7824-6906
Adam R RensloDepartment of Pharmaceutical Chemistry, University of California, 600 16th Street, San Francisco, California 94143, United States.ORCID 0000-0002-1240-2846

Funding

UCSF IRACDA Scholars ProgramK12GM081266 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Raymond M. Esquerra, HOLLY A. INGRAHAM · 2007 to 2026
$19.4M
Research Training in Chemistry and Chemical BiologyT32GM145460 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jason E Gestwicki · 2022 to 2026
$3.1M
Optimizing brain penetrance of caspase-6 inhibitors to treat neurodegenerative diseasesR41AG078036 · NIA · ELGIA THERAPEUTICS, INC. · PI ARKIN, MICHELLE, CANAN, STACIE · 2023 to 2024
$288k
NIA NIH HHS R41 AG078036NIGMS NIH HHS K12 GM081266NIGMS NIH HHS T32 GM145460
6 · The paper itself

Abstract

Heteroaromatic stacking interactions are important in drug binding, supramolecular chemistry, and materials science, making protein-ligand model systems of these interactions of considerable interest. Here we studied 30 congeneric ligands that each present a distinct heteroarene for stacking between tyrosine residues at the dimer interface of procaspase-6. Complex X-ray crystal structures of 10 analogs showed that stacking geometries were well conserved, while high-accuracy computations showed that heteroarene stacking energy was well correlated with predicted overall ligand binding energies. Empirically determined

Indexed as

ProteinsTyrosineLigandsModels, MolecularLigandsProteinsTyrosine

Identifiers

PMID37406165
PMCPMC10388292

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.