Evidence map›Paper›PMID 37406101›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Naturally mutagenic sequence diversity in a human type II topoisomerase.

Afif F Bandak, Tim R Blower, Karin C Nitiss, Raveena Gupta, Albert Y Lau, Ria Guha, John L Nitiss, James M Berger

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. A multispecies toolkit ofProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Structural Mechanisms of Topoisomerase-Targeting Drugs.Annual review of biochemistry · 2025
    Review
  4. Review
  5. Yeast Tools for Studying Type II Topoisomerases in Budding Yeast.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  6. Genome Instability Induced by Topoisomerase Misfunction.International journal of molecular sciences · 2024
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Afif F BandakDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205.ORCID 0000-0002-8352-5050
Tim R BlowerDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205.ORCID 0000-0002-7390-6458
Karin C NitissPharmaceutical Sciences Department, University of Illinois College of Pharmacy, Rockford, IL 61107.
Raveena GuptaPharmaceutical Sciences Department, University of Illinois College of Pharmacy, Rockford, IL 61107.
Albert Y LauDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205.
Ria GuhaPharmaceutical Sciences Department, University of Illinois College of Pharmacy, Rockford, IL 61107.
John L NitissPharmaceutical Sciences Department, University of Illinois College of Pharmacy, Rockford, IL 61107.
James M BergerDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205.ORCID 0000-0003-0666-1240
Johns Hopkins University · USUniversity of Illinois Urbana-Champaign · USIllinois College · US

Funding

PROGRAM IN MOLECULAR BIOPHYSICST32GM008403 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BARRICK, DOUGLAS E. · 1990 to 2019
$13.5M
Structural and Biochemical Analyses of Type II DNA TopoisomerasesR01CA077373 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI BERGER, JAMES M. · 1999 to 2021
$7.6M
Program of Molecular BiophysicsT32GM135131 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Karen G. Fleming · 2020 to 2026
$5.4M
Understanding and exploiting DNA topoisomerases in cancer biologyR35CA263778 · NCI · JOHNS HOPKINS UNIVERSITY · PI James M. Berger · 2021 to 2026
$5.0M
Breakthrough Molecular Dynamics Research via an Anton2 SupercomputerR01GM116961 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI BLOOD, PHILIP D. · 2016 to 2023
$3.0M
Novel approaches for studying topoisomerase 2 targeting anti-cancer drugsR03CA216010 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI NITISS, JOHN L · 2017 to 2018
$160k
NCI NIH HHS R01 CA077373NCI NIH HHS R03 CA216010NCI NIH HHS R35 CA263778NIGMS NIH HHS R01 GM116961NIGMS NIH HHS T32 GM008403NIGMS NIH HHS T32 GM135131
6 · The paper itself

Abstract

Type II topoisomerases transiently cleave duplex DNA as part of a strand passage mechanism that helps control chromosomal organization and superstructure. Aberrant DNA cleavage can result in genomic instability, and how topoisomerase activity is controlled to prevent unwanted breaks is poorly understood. Using a genetic screen, we identified mutations in the beta isoform of human topoisomerase II (hTOP2β) that render the enzyme hypersensitive to the chemotherapeutic agent etoposide. Several of these variants were unexpectedly found to display hypercleavage behavior in vitro and to be capable of inducing cell lethality in a DNA repair-deficient background; surprisingly, a subset of these mutations were also observed in

Indexed as

MutagensNeoplasmsDNADNA DamageDNA Topoisomerases, Type IIEtoposideHumansTopoisomerase II InhibitorsDNADNA Topoisomerases, Type IIEtoposideMutagensTopoisomerase II InhibitorscancerchemotherapeuticDNA damageprotein dynamicstopoisomerase

Identifiers

PMID37406101
PMCPMC10334734
OpenAlexW4383198584

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.