Evidence map›Paper›PMID 37401921›Full record

ArticleeLife2023

High-throughput library transgenesis in

Zachary C Stevenson, Megan J Moerdyk-Schauwecker, Stephen A Banse, Dhaval S Patel, Hang Lu, Patrick C Phillips

Open access · goldAbstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 13 citations in OpenAlex.

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  16. An expanded GCaMP reporter toolkit for functional imaging inbioRxiv : the preprint server for biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Zachary C StevensonInstitute of Ecology and Evolution, University of Oregon, Eugene, United States.ORCID 0000-0002-6564-6967
Megan J Moerdyk-SchauweckerInstitute of Ecology and Evolution, University of Oregon, Eugene, United States.
Stephen A BanseInstitute of Ecology and Evolution, University of Oregon, Eugene, United States.ORCID 0000-0002-5540-4526
Dhaval S PatelSchool of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, United States.
Hang LuSchool of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, United States.ORCID 0000-0002-6881-660X
Patrick C PhillipsInstitute of Ecology and Evolution, University of Oregon, Eugene, United States.ORCID 0000-0001-7271-342X
University of Oregon · USGeorgia Institute of Technology · US

Funding

Graduate Training in Genetics Administrative Supplement - Career Curriculum DevelopmentT32GM007413 · NIGMS · UNIVERSITY OF OREGON · PI GUILLEMIN, KAREN J · 1985 to 2022
$7.8M
Systems genomics of complex traitsR35GM131838 · NIGMS · UNIVERSITY OF OREGON · PI Patrick C. Phillips · 2019 to 2026
$2.7M
Systems variation underlying the genetics of agingR01AG056436 · NIA · UNIVERSITY OF OREGON · PI LU, HANG, PHILLIPS, PATRICK C. · 2017 to 2021
$2.7M
NIA NIH HHS R01 AG056436NIGMS NIH HHS R35 GM131838NIGMS NIH HHS T32 GM007413NIH HHS R01AG056436NIH HHS R35GM131838
6 · The paper itself

Abstract

High-throughput transgenesis using synthetic DNA libraries is a powerful method for systematically exploring genetic function. Diverse synthesized libraries have been used for protein engineering, identification of protein-protein interactions, characterization of promoter libraries, developmental and evolutionary lineage tracking, and various other exploratory assays. However, the need for library transgenesis has effectively restricted these approaches to single-cell models. Here, we present Transgenic Arrays Resulting in Diversity of Integrated Sequences (TARDIS), a simple yet powerful approach to large-scale transgenesis that overcomes typical limitations encountered in multicellular systems. TARDIS splits the transgenesis process into a two-step process: creation of individuals carrying experimentally introduced sequence libraries, followed by inducible extraction and integration of individual sequences/library components from the larger library cassette into engineered genomic sites. Thus, transformation of a single individual, followed by lineage expansion and functional transgenesis, gives rise to thousands of genetically unique transgenic individuals. We demonstrate the power of this system using engineered, split selectable TARDIS sites in

Indexed as

Caenorhabditis elegansGene LibraryGene Transfer TechniquesTransgenesAnimalsAnimals, Genetically ModifiedDNA Barcoding, TaxonomicGenetic VariationPromoter Regions, GeneticbarcodingC. elegansCRISPRgeneticsgenomicslibrarymetaploidyTARDIStransgenesis

Identifiers

PMID37401921
PMCPMC10328503
OpenAlexW4327587514

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.