Evidence map›Paper›PMID 37399103›Full record

ArticleHuman molecular genetics2023

Genome-wide association study identifies multiple HLA loci for sarcoidosis susceptibility.

Shu-Yi Liao, Sean Jacobson, Nabeel Y Hamzeh, Daniel A Culver, Briana Q Barkes, Margarita Mroz, Kristyn Macphail, Karin Pacheco, Divya C Patel, Yasmine S Wasfi and 8 more

Open access · greenAbstract read
In one paragraph

Article in Human molecular genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
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  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Immunopathogenesis of Sarcoidosis.Seminars in respiratory and critical care medicine · 2025
    Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Genome and Transcriptome-Wide Association Study of Fibrotic Sarcoidosis in European Americans.American journal of respiratory and critical care medicine · 2024
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 1 country.

Shu-Yi LiaoDepartment of Medicine, National Jewish Health, Denver, CO 80206, USA.
Sean JacobsonDepartment of Medicine, National Jewish Health, Denver, CO 80206, USA.
Nabeel Y HamzehDepartment of Medicine, University of Iowa, Iowa City, IA 52242, USA.
Daniel A CulverDepartment of Medicine, Cleveland Clinic, Cleveland, OH 44195, USA.
Briana Q BarkesDepartment of Medicine, National Jewish Health, Denver, CO 80206, USA.
Margarita MrozDepartment of Medicine, National Jewish Health, Denver, CO 80206, USA.
Kristyn MacphailDepartment of Medicine, National Jewish Health, Denver, CO 80206, USA.
Karin PachecoDepartment of Medicine, National Jewish Health, Denver, CO 80206, USA.
Divya C PatelDepartment of Medicine, Division of Pulmonary, Critical Care and Sleep Medicine, University of Florida, Gainesville, FL 32610, USA.
Yasmine S WasfiJohnson & Johnson, Spring House, PA 19034, USA.
Laura L KothDepartment of Medicine, University of California-San Fransisco, San Fransisco, CA 94143, USA.
Carl D LangefeldDepartment of Biostatistics and Data Science, Wake Forest University School of Medicine, Winston-Salem, NC 27101, USA.
Sonia M LeachDepartment of Medicine, National Jewish Health, Denver, CO 80206, USA.
Elizabeth WhiteDepartment of Medicine, National Jewish Health, Denver, CO 80206, USA.
Courtney MontgomeryOklahoma Medical Research Foundation, Oklahoma City, OK 73104, USA.
Lisa A MaierDepartment of Medicine, National Jewish Health, Denver, CO 80206, USA.
Tasha E FingerlinDepartment of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
GRADs Investigators
National Jewish Health · USUniversity of Colorado Denver · USUniversity of Colorado Anschutz Medical Campus · USCleveland Clinic · USJohnson & Johnson (United States) · USOklahoma Medical Research Foundation · USUniversity of Florida · USUniversity of Iowa · USWake Forest University · US

Funding

CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR025780 · NCRR · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2008 to 2011
$61.3M
University of Pittsburgh Clinical and Translational Science InstituteUL1TR000005 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E · 2012 to 2015
$50.8M
Sustaining the Expansion of the National Mesothelioma Virtual Bank (NMVB)U24OH009077 · OH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BECICH, MICHAEL JOHN, DACIC, SANJA · 2008 to 2025
$18.0M
SOUTH CAROLINA CLINICAL & TRANSLATIONAL RESEARCH INSTITUTE (SCTR)UL1RR029882 · NCRR · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BRADY, KATHLEEN T. · 2009 to 2011
$10.1M
Comprehensive Genome Interrogation of African American Sarcoidosis FamiliesR01HL113326 · NHLBI · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI MONTGOMERY, COURTNEY · 2012 to 2022
$8.7M
Sarcoidosis and A1AT Genomics & Informatics CenterU01HL112707 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BECICH, MICHAEL JOHN, KAMINSKI, NAFTALI · 2012 to 2015
$8.5M
The Impact of Environmental Exposures on Sarcoidosis Incidence and MortalityR01HL157533 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Wonder P. Drake, Connie C. W. Hsia · 2022 to 2026
$5.7M
Genetic Risk for Granulomatous Interstitial Lung DiseaseR01HL114587 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI FINGERLIN, TASHA E. · 2013 to 2018
$3.2M
Novel integrative approaches for disease phenotyping, utilizing radiomics in SarcoidosisR01HL142049 · NHLBI · NATIONAL JEWISH HEALTH · PI CARLSON, NICHOLE, FINGERLIN, TASHA E. · 2019 to 2022
$2.6M
Ancillary T Cell Based Studies in SPIROMICSR01HL110883 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI KHERADMAND, FARRAH · 2012 to 2015
$1.6M
Significance Circulating Semaphorin 7a+ve Cells in Pulmonary SarcoidosisU01HL112702 · NHLBI · YALE UNIVERSITY · PI HERZOG, ERICA L · 2012 to 2014
$488k
GRADS Cooperative Research Project: JHU Clinical CenterU01HL112708 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI MOLLER, DAVID R · 2012 to 2014
$481k
NCATS NIH HHS UL1 TR000005NCRR NIH HHS UL1 RR025780NCRR NIH HHS UL1 RR029882NHLBI NIH HHS R01 HL110883NHLBI NIH HHS R01 HL113326NHLBI NIH HHS R01 HL114587NHLBI NIH HHS R01 HL142049NHLBI NIH HHS R01 HL157533NHLBI NIH HHS U01 HL112694NHLBI NIH HHS U01 HL112695NHLBI NIH HHS U01 HL112696NHLBI NIH HHS U01 HL112702NHLBI NIH HHS U01 HL112707NHLBI NIH HHS U01 HL112708NHLBI NIH HHS U01 HL112711NHLBI NIH HHS U01 HL112712NIH HHS U01 HL112707NIOSH CDC HHS U24 OH009077
6 · The paper itself

Abstract

Sarcoidosis is a complex systemic disease. Our study aimed to (1) identify novel alleles associated with sarcoidosis susceptibility; (2) provide an in-depth evaluation of HLA alleles and sarcoidosis susceptibility and (3) integrate genetic and transcription data to identify risk loci that may more directly impact disease pathogenesis. We report a genome-wide association study of 1335 sarcoidosis cases and 1264 controls of European descent (EA) and investigate associated alleles in a study of African Americans (AA: 1487 cases and 1504 controls). The EA and AA cohort was recruited from multiple United States sites. HLA alleles were imputed and tested for association with sarcoidosis susceptibility. Expression quantitative locus and colocalization analysis were performed using a subset of subjects with transcriptome data. Forty-nine SNPs in the HLA region in HLA-DRA, -DRB9, -DRB5, -DQA1 and BRD2 genes were significantly associated with sarcoidosis susceptibility in EA, rs3129888 was also a risk variant for sarcoidosis in AA. Classical HLA alleles DRB1*0101, DQA1*0101 and DQB1*0501, which are highly correlated, were also associated with sarcoidosis. rs3135287 near HLA-DRA was associated with HLA-DRA expression in peripheral blood mononuclear cells and bronchoalveolar lavage from subjects and lung tissue and whole blood from GTEx. We identified six novel SNPs (out of the seven SNPs representing the 49 significant SNPs) and nine HLA alleles associated with sarcoidosis susceptibility in the largest EA population. We also replicated our findings in an AA population. Our study reiterates the potential role of antigen recognition and/or presentation HLA class II genes in sarcoidosis pathogenesis.

Indexed as

Genome-Wide Association StudySarcoidosisAllelesGenetic Predisposition to DiseaseHLA-DR alpha-ChainsHLA-DRB1 ChainsHumansLeukocytes, MononuclearHLA-DR alpha-ChainsHLA-DRB1 Chains

Identifiers

PMID37399103
PMCPMC10407706
OpenAlexW4382931940

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.