Evidence map›Paper›PMID 37398153›Full record

ArticlebioRxiv : the preprint server for biology2023

Anindya Roy, Lei Shi, Ashley Chang, Xianchi Dong, Andres Fernandez, John C Kraft, Jing Li, Viet Q Le, Rebecca Viazzo Winegar, Gerald Maxwell Cherf and 30 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

40 authors at 10 institutions in 5 countries.

Anindya RoyDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Lei ShiDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Ashley ChangDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602, USA.
Xianchi DongProgram in Cellular and Molecular Medicine, Children's Hospital Boston, and Departments of Biological Chemistry and Molecular Pharmacology and of Medicine, Harvard Medical School, Boston, United States.
Andres FernandezDivision of Basic Sciences, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
John C KraftDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Jing LiProgram in Cellular and Molecular Medicine, Children's Hospital Boston, and Departments of Biological Chemistry and Molecular Pharmacology and of Medicine, Harvard Medical School, Boston, United States.
Viet Q LeProgram in Cellular and Molecular Medicine, Children's Hospital Boston, and Departments of Biological Chemistry and Molecular Pharmacology and of Medicine, Harvard Medical School, Boston, United States.
Rebecca Viazzo WinegarDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602, USA.
Gerald Maxwell CherfDepartment of Bioengineering, Stanford University, Stanford CA 94305.
Dean SlocumDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602, USA.
P Daniel PoulsonDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602, USA.
Garrett E CasperDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602, USA.
Mary L Vallecillo-ZúnigaDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602, USA.
Jonard Corpuz ValdozDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602, USA.
Marcos C MirandaDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Hua BaiDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Yakov KipnisDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Audrey OlshefskyDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Tanu PriyaDepartment of Materials Science and Engineering, University of Washington, Seattle, WA 98195, USA.
Lauren CarterDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Rashmi RavichandranDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Cameron M ChowDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Max R JohnsonDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Suna ChengDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
McKaela SmithDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Catherine Overed-SayerResearch and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Cambridge, United Kingdom.
Donna K FinchResearch and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Cambridge, United Kingdom.
David LoweResearch and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Cambridge, United Kingdom.
Asim K BeraDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Gustavo Matute-BelloCenter for Lung Biology, Division of Pulmonary, Critical Care and Sleep Medicine, University of Washington.
Timothy P BirklandDivision of Pulmonary, Critical Care and Sleep Medicine, Department of Medicine, University of Washington, Seattle, Washington.
Frank DiMaioDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Ganesh RaghuDivision of Pulmonary, Critical Care and Sleep Medicine, Department of Medicine, University of Washington, Seattle, Washington.
Jennifer R CochranDepartment of Bioengineering, Stanford University, Stanford CA 94305.
Lance J StewartDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Melody G CampbellDivision of Basic Sciences, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Pam M Van RyDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602, USA.
Timothy SpringerProgram in Cellular and Molecular Medicine, Children's Hospital Boston, and Departments of Biological Chemistry and Molecular Pharmacology and of Medicine, Harvard Medical School, Boston, United States.
David BakerDepartment of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
University of Washington · USBrigham Young University · USBoston University · USAstraZeneca (United Kingdom) · GBFred Hutch Cancer Center · USDenali Therapeutics (United States) · USHoward Hughes Medical Institute · USKarolinska University Hospital · SENorthwestern University · USStanford University · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
High resolution structure modeling with RosettaR01GM092802 · NIGMS · UNIVERSITY OF WASHINGTON · PI BAKER, DAVID · 2010 to 2017
$2.3M
The Molecular Basis for Integrin-Mediated Bidirectional SignalingR35GM147414 · NIGMS · FRED HUTCHINSON CANCER CENTER · PI Melody G Campbell · 2022 to 2026
$2.2M
TGF-beta latency and activationR01AR067288 · NIAMS · BOSTON CHILDREN'S HOSPITAL · PI SPRINGER, TIMOTHY A · 2015 to 2019
$1.9M
Blocking Latent TGF-β2 Activation as a Therapeutic Strategy for Renal FibrosisK01DK124443 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI LE, VIET QUOC · 2021 to 2025
$771k
NCI NIH HHS P30 CA015704NIAMS NIH HHS R01 AR067288NIDDK NIH HHS K01 DK124443NIGMS NIH HHS R01 GM092802NIGMS NIH HHS R35 GM147414NIGMS NIH HHS T32 GM008268
6 · The paper itself

Abstract

The RGD (Arg-Gly-Asp)-binding integrins αvβ6 and αvβ8 are clinically validated cancer and fibrosis targets of considerable therapeutic importance. Compounds that can discriminate between the two closely related integrin proteins and other RGD integrins, stabilize specific conformational states, and have sufficient stability enabling tissue restricted administration could have considerable therapeutic utility. Existing small molecules and antibody inhibitors do not have all of these properties, and hence there is a need for new approaches. Here we describe a method for computationally designing hyperstable RGD-containing miniproteins that are highly selective for a single RGD integrin heterodimer and conformational state, and use this strategy to design inhibitors of αvβ6 and αvβ8 with high selectivity. The αvβ6 and αvβ8 inhibitors have picomolar affinities for their targets, and >1000-fold selectivity over other RGD integrins. CryoEM structures are within 0.6-0.7Å root-mean-square deviation (RMSD) to the computational design models; the designed αvβ6 inhibitor and native ligand stabilize the open conformation in contrast to the therapeutic anti-αvβ6 antibody BG00011 that stabilizes the bent-closed conformation and caused on-target toxicity in patients with lung fibrosis, and the αvβ8 inhibitor maintains the constitutively fixed extended-closed αvβ8 conformation. In a mouse model of bleomycin-induced lung fibrosis, the αvβ6 inhibitor potently reduced fibrotic burden and improved overall lung mechanics when delivered via oropharyngeal administration mimicking inhalation, demonstrating the therapeutic potential of

Identifiers

PMID37398153
PMCPMC10312613
OpenAlexW4380486946

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.