Evidence map›Paper›PMID 37398013›Full record

ArticlebioRxiv : the preprint server for biology2023

Fusion crystallization reveals the behavior of both the 1TEL crystallization chaperone and the TNK1 UBA domain.

Supeshala Nawarathnage, Yi Jie Tseng, Sara Soleimani, Tobin Smith, Maria J Pedroza Romo, Wisdom Oshireku Abiodun, Christina M Egbert, Deshan Madhusanka, Derick Bunn, Bridger Woods and 6 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Supeshala NawarathnageDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.
Yi Jie TsengDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.
Sara SoleimaniDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.
Tobin SmithDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.
Maria J Pedroza RomoDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.
Wisdom Oshireku AbiodunDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.
Christina M EgbertDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.
Deshan MadhusankaDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.
Derick BunnDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.
Bridger WoodsDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.
Evan TsubakiDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.
Cameron StewartDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.
Seth BrownDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.
Tzanko DoukovMacromolecular Crystallography Group, Structural Molecular Biology Resource, Stanford Synchrotron Radiation Lightsource, Menlo Park, California, United States of America.
Joshua L AndersenDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.
James D MoodyDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America.
Brigham Young University · USStanford Synchrotron Radiation Lightsource · US

Funding

A Synchrotron Radiation Structural Biology ResourcesP30GM133894 · NIGMS · STANFORD UNIVERSITY · PI Ritimukta Sarangi · 2020 to 2026
$43.3M
The Regulation and Function of the Ubiquitin-Sensing Kinase TNK1R01GM147310 · NIGMS · UNIVERSITY OF UTAH · PI ANDERSEN, JOSHUA LYON · 2022 to 2024
$957k
TELSAM polymers are powerful crystallization chaperones meriting continued investigation (Diversity Supplement)R15GM146209 · NIGMS · BRIGHAM YOUNG UNIVERSITY · PI MOODY, JAMES DANIEL · 2022 to 2024
$520k
NIGMS NIH HHS P30 GM133894NIGMS NIH HHS R01 GM147310NIGMS NIH HHS R15 GM146209
6 · The paper itself

Abstract

Human thirty-eight-negative kinase-1 (TNK1) is implicated in cancer progression. The TNK1-UBA domain binds polyubiquitin and plays a regulatory role in TNK1 activity and stability. Sequence analysis suggests an unusual architecture for the TNK1 UBA domain, but an experimentally-validated molecular structure is undetermined. To gain insight into TNK1 regulation, we fused the UBA domain to the 1TEL crystallization chaperone and obtained crystals diffracting as far as 1.53 Å. A 1TEL search model enabled solution of the X-ray phases. GG and GSGG linkers allowed the UBA to reproducibly find a productive binding mode against its host 1TEL polymer and to crystallize at protein concentrations as low as 0.1 mg/mL. Our studies support a mechanism of TELSAM fusion crystallization and show that TELSAM fusion crystals require fewer crystal contacts than traditional protein crystals. Modeling and experimental validation suggest the UBA domain may be selective for both the length and linkages of polyubiquitin chains.

Identifiers

PMID37398013
PMCPMC10312729
OpenAlexW4380789976

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.