Evidence map›Paper›PMID 37397361›Full record

ArticleFrontiers in oncology2023

Deep learning classification of deep ultraviolet fluorescence images toward intra-operative margin assessment in breast cancer.

Tyrell To, Tongtong Lu, Julie M Jorns, Mollie Patton, Taly Gilat Schmidt, Tina Yen, Bing Yu, Dong Hye Ye

Abstract read
In one paragraph

Article in Frontiers in oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tyrell ToDepartment of Electrical and Computer Engineering, Marquette University, Opus College of Engineering, Milwaukee, WI, United States.
Tongtong LuJoint Department of Biomedical Engineering, Marquette University and Medical College of Wisconsin, Milwaukee, WI, United States.
Julie M JornsDepartment of Pathology, Medical College of Wisconsin, Milwaukee, WI, United States.
Mollie PattonDepartment of Pathology, Medical College of Wisconsin, Milwaukee, WI, United States.
Taly Gilat SchmidtJoint Department of Biomedical Engineering, Marquette University and Medical College of Wisconsin, Milwaukee, WI, United States.
Tina YenDepartment of Surgery, Medical College of Wisconsin, Milwaukee, WI, United States.
Bing YuJoint Department of Biomedical Engineering, Marquette University and Medical College of Wisconsin, Milwaukee, WI, United States.
Dong Hye YeDepartment of Computer Science, Georgia State University, Atlanta, GA, United States.

Funding

Deep learning enabled, deep ultraviolet scanning microscopy for intraoperative assessment of margin status during breast cancer surgeryR01EB033806 · NIBIB · MARQUETTE UNIVERSITY · PI YE, DONG HYE, YU, BING · 2022 to 2025
$1.5M
NIBIB NIH HHS R01 EB033806
6 · The paper itself

Abstract

Background: Breast-conserving surgery is aimed at removing all cancerous cells while minimizing the loss of healthy tissue. To ensure a balance between complete resection of cancer and preservation of healthy tissue, it is necessary to assess themargins of the removed specimen during the operation. Deep ultraviolet (DUV) fluorescence scanning microscopy provides rapid whole-surface imaging (WSI) of resected tissues with significant contrast between malignant and normal/benign tissue. Intra-operative margin assessment with DUV images would benefit from an automated breast cancer classification method. Methods: Deep learning has shown promising results in breast cancer classification, but the limited DUV image dataset presents the challenge of overfitting to train a robust network. To overcome this challenge, the DUV-WSI images are split into small patches, and features are extracted using a pre-trained convolutional neural network-afterward, a gradient-boosting tree trains on these features for patch-level classification. An ensemble learning approach merges patch-level classification results and regional importance to determine the margin status. An explainable artificial intelligence method calculates the regional importance values. Results: The proposed method's ability to determine the DUV WSI was high with 95% accuracy. The 100% sensitivity shows that the method can detect malignant cases efficiently. The method could also accurately localize areas that contain malignant or normal/benign tissue. Conclusion: The proposed method outperforms the standard deep learning classification methods on the DUV breast surgical samples. The results suggest that it can be used to improve classification performance and identify cancerous regions more effectively.

Indexed as

breast cancer classificationdeep learningexplainable AIfluorescence imagetransfer learning

Identifiers

PMID37397361
PMCPMC10313133

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.