Evidence map›Paper›PMID 37394919›Full record

ReviewEndocrinology2023

Chromatin Organization and Transcriptional Programming of Breast Cancer Cell Identity.

Jessica R Bobbitt, Darcie D Seachrist, Ruth A Keri

Abstract readReview
In one paragraph

Review in Endocrinology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Microbial cell (Graz, Austria) · 2026
    Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Jessica R BobbittDepartment of Cancer Biology, Cleveland Clinic Lerner Research Institute, Cleveland, OH 44195, USA.ORCID 0000-0002-6961-4970
Darcie D SeachristDepartment of Cancer Biology, Cleveland Clinic Lerner Research Institute, Cleveland, OH 44195, USA.ORCID 0000-0001-8399-3391
Ruth A KeriDepartment of Cancer Biology, Cleveland Clinic Lerner Research Institute, Cleveland, OH 44195, USA.ORCID 0000-0002-1640-3088

Funding

Supplement - Discovering the role of YES1 in triple negative breast cancerR01CA257502 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI KERI, RUTH A. · 2021 to 2025
$2.8M
Targeting BET proteins in Triple Negative Breast CancerR01CA206505 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI KERI, RUTH A. · 2016 to 2020
$1.8M
Functional Genomics Training Program (FGTP)T32GM135081 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI Thomas Louis LaFramboise, Helen C Miranda · 2020 to 2026
$1.3M
NCI NIH HHS R01 CA206505NCI NIH HHS R01 CA257502NIGMS NIH HHS T32 GM135081NIH HHS R01CA257502
6 · The paper itself

Abstract

The advent of sequencing technologies for assessing chromosome conformations has provided a wealth of information on the organization of the 3-dimensional genome and its role in cancer progression. It is now known that changes in chromatin folding and accessibility can promote aberrant activation or repression of transcriptional programs that can drive tumorigenesis and progression in diverse cancers. This includes breast cancer, which comprises several distinct subtypes defined by their unique transcriptomes that dictate treatment response and patient outcomes. Of these, basal-like breast cancer is an aggressive subtype controlled by a pluripotency-enforcing transcriptome. Meanwhile, the more differentiated luminal subtype of breast cancer is driven by an estrogen receptor-dominated transcriptome that underlies its responsiveness to antihormone therapies and conveys improved patient outcomes. Despite the clear differences in molecular signatures, the genesis of each subtype from normal mammary epithelial cells remains unclear. Recent technical advances have revealed key distinctions in chromatin folding and organization between subtypes that could underlie their transcriptomic and, hence, phenotypic differences. These studies also suggest that proteins controlling particular chromatin states may be useful targets for treating aggressive disease. In this review, we explore the current state of understanding of chromatin architecture in breast cancer subtypes and its potential role in defining their phenotypic characteristics.

Indexed as

Breast NeoplasmsBreastCell Line, TumorChromatinFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansChromatinbreast cancercell plasticitychromatin organization

Identifiers

PMID37394919
PMCPMC10370366

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.