Evidence map›Paper›PMID 37391902›Full record

ArticleMolecular plant2023

The AFB1 auxin receptor controls the cytoplasmic auxin response pathway in Arabidopsis thaliana.

Shiv Mani Dubey, Soeun Han, Nathan Stutzman, Michael J Prigge, Eva Medvecká, Matthieu Pierre Platre, Wolfgang Busch, Matyáš Fendrych, Mark Estelle

Open access · hybridAbstract read
In one paragraph

Article in Molecular plant, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
24.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 63 citations in OpenAlex.

  1. Live Imaging of Grass Roots Growth Dynamics Using Microfluidics.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Aux/IAAs: specificity and redundancy.Plant signaling & behavior · 2025
    Review
  9. Mechanisms of auxin action in plant growth and development.Nature reviews. Molecular cell biology · 2025
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Slow and rapid auxin responses in Arabidopsis.Journal of experimental botany · 2024
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Shiv Mani DubeyDepartment of Experimental Plant Biology, Faculty of Sciences, Charles University, Prague, Czech Republic.
Soeun HanSection of Cell and Developmental Biology, University of California San Diego, La Jolla, CA, USA.
Nathan StutzmanSection of Cell and Developmental Biology, University of California San Diego, La Jolla, CA, USA.
Michael J PriggeSection of Cell and Developmental Biology, University of California San Diego, La Jolla, CA, USA.
Eva MedveckáDepartment of Experimental Plant Biology, Faculty of Sciences, Charles University, Prague, Czech Republic.
Matthieu Pierre PlatrePlant Molecular and Cellular Biology Laboratory and Integrative Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA.
Wolfgang BuschPlant Molecular and Cellular Biology Laboratory and Integrative Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA.
Matyáš FendrychDepartment of Experimental Plant Biology, Faculty of Sciences, Charles University, Prague, Czech Republic. Electronic address: matyas.fendrych@natur.cuni.cz.
Mark EstelleSection of Cell and Developmental Biology, University of California San Diego, La Jolla, CA, USA. Electronic address: mestelle@ucsd.edu.
University of California San Diego · USCharles University · CZSalk Institute for Biological Studies · US

Funding

MOLECULAR GENETICS OF AUXIN ACTION IN ARABIDOPSISR01GM043644 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI ESTELLE, MARK A · 1989 to 2021
$6.0M
Molecular Signal Integration for Root Growth ControlR01GM127759 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Wolfgang Busch · 2018 to 2026
$3.2M
Novel auxin signaling components and pathways.R35GM141892 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ESTELLE, MARK A · 2021 to 2025
$1.8M
NIGMS NIH HHS R01 GM043644NIGMS NIH HHS R01 GM127759NIGMS NIH HHS R35 GM141892
6 · The paper itself

Abstract

The phytohormone auxin triggers root growth inhibition within seconds via a non-transcriptional pathway. Among members of the TIR1/AFB auxin receptor family, AFB1 has a primary role in this rapid response. However, the unique features that confer this specific function have not been identified. Here we show that the N-terminal region of AFB1, including the F-box domain and residues that contribute to auxin binding, is essential and sufficient for its specific role in the rapid response. Substitution of the N-terminal region of AFB1 with that of TIR1 disrupts its distinct cytoplasm-enriched localization and activity in rapid root growth inhibition by auxin. Importantly, the N-terminal region of AFB1 is indispensable for auxin-triggered calcium influx, which is a prerequisite for rapid root growth inhibition. Furthermore, AFB1 negatively regulates lateral root formation and transcription of auxin-induced genes, suggesting that it plays an inhibitory role in canonical auxin signaling. These results suggest that AFB1 may buffer the transcriptional auxin response, whereas it regulates rapid changes in cell growth that contribute to root gravitropism.

Indexed as

ArabidopsisArabidopsis ProteinsF-Box ProteinsCytosolGene Expression Regulation, PlantIndoleacetic AcidsPlant Growth RegulatorsPlant RootsReceptors, Cell SurfaceArabidopsis ProteinsF-Box ProteinsIndoleacetic AcidsPlant Growth RegulatorsReceptors, Cell SurfaceArabidopsisauxin signalingcalciumgravitropismlateral root

Identifiers

PMID37391902
PMCPMC10720607
OpenAlexW4382724088

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.