Evidence map›Paper›PMID 37391695›Full record

ArticleBMC plant biology2023

Molecular network of the oil palm root response to aluminum stress.

Fernan Santiago Mejia-Alvarado, David Botero-Rozo, Leonardo Araque, Cristihian Bayona, Mariana Herrera-Corzo, Carmenza Montoya, Iván Ayala-Díaz, Hernán Mauricio Romero

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Overexpression ofInternational journal of molecular sciences · 2025
    Article
  2. Article
  3. Article
  4. Unveiling the Secrets of Oil Palm Genetics: A Look into Omics Research.International journal of molecular sciences · 2024
    Review
  5. Oil Palm AP2 Subfamily GeneInternational journal of molecular sciences · 2024
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Fernan Santiago Mejia-AlvaradoColombian Oil Palm Research Center - Cenipalma, Oil Palm Biology, and Breeding Research Program, Bogotá, 11121, Colombia.
David Botero-RozoColombian Oil Palm Research Center - Cenipalma, Oil Palm Biology, and Breeding Research Program, Bogotá, 11121, Colombia.
Leonardo AraqueColombian Oil Palm Research Center - Cenipalma, Oil Palm Biology, and Breeding Research Program, Bogotá, 11121, Colombia.
Cristihian BayonaColombian Oil Palm Research Center - Cenipalma, Oil Palm Biology, and Breeding Research Program, Bogotá, 11121, Colombia.
Mariana Herrera-CorzoColombian Oil Palm Research Center - Cenipalma, Oil Palm Biology, and Breeding Research Program, Bogotá, 11121, Colombia.
Carmenza MontoyaColombian Oil Palm Research Center - Cenipalma, Oil Palm Biology, and Breeding Research Program, Bogotá, 11121, Colombia.
Iván Ayala-DíazColombian Oil Palm Research Center - Cenipalma, Oil Palm Biology, and Breeding Research Program, Bogotá, 11121, Colombia.
Hernán Mauricio RomeroColombian Oil Palm Research Center - Cenipalma, Oil Palm Biology, and Breeding Research Program, Bogotá, 11121, Colombia. hmromeroa@unal.edu.co.
Universidad Nacional de Colombia · CO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe solubilization of aluminum ions (Al

resultsDifferential gene expression and network analysis of four contrasting oil palm genotypes (IRHO 7001, CTR 3-0-12, CR 10-0-2, and CD 19 - 12) exposed to Al-stress helped to identify a set of genes and modules involved in oil palm early response to the metal. Networks including the ABA-independent transcription factors DREB1F and NAC and the calcium sensor Calmodulin-like (CML) that could induce the expression of internal detoxifying enzymes GRXC1, PER15, ROMT, ZSS1, BBI, and HS1 against Al-stress were identified. Also, some gene networks pinpoint the role of secondary metabolites like polyphenols, sesquiterpenoids, and antimicrobial components in reducing oxidative stress in oil palm seedlings. STOP1 expression could be the first step of the induction of common Al-response genes as an external detoxification mechanism mediated by ABA-dependent pathways.

conclusionsTwelve hub genes were validated in this study, supporting the reliability of the experimental design and network analysis. Differential expression analysis and systems biology approaches provide a better understanding of the molecular network mechanisms of the response to aluminum stress in oil palm roots. These findings settled a basis for further functional characterization of candidate genes associated with Al-stress in oil palm.

Indexed as

AluminumCalciumCalmodulinCell DivisionReproducibility of ResultsAluminumCalciumCalmodulinAbiotic stressDifferential expression analysisElaeis guineensisGene co-expression networkSTOP1

Identifiers

PMID37391695
PMCPMC10311834
OpenAlexW4382775725

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.