Evidence map›Paper›PMID 37388909›Full record

ReviewCell genomics2023

From function to translation: Decoding genetic susceptibility to human diseases via artificial intelligence.

Erping Long, Peixing Wan, Qingyu Chen, Zhiyong Lu, Jiyeon Choi

Abstract readReview
In one paragraph

Review in Cell genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Genetic regulation of mScience China. Life sciences · 2024
    Review
  7. Review
  8. Opportunities and Challenges in Applying AI to Evolutionary Morphology.Integrative organismal biology (Oxford, England) · 2024
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Erping LongInstitute of Basic Medical Sciences, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
Peixing WanCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Qingyu ChenNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Zhiyong LuNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Jiyeon ChoiDivision of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.

Funding

Laboratory of Translational GenomicsZIACP010201 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI PROKUNINA-OLSSON, LIUDMILA · 2010 to 2025
$91.2M
Machine Learning and Natural Language Processing for Biomedical ApplicationsZIALM237241 · NLM · NATIONAL LIBRARY OF MEDICINE · PI LU, ZHIYONG · 2023 to 2025
$12.2M
Natural language processing and medical imaging analysis for multi-modality computer assisted diagnosis of ophthalmic diseasesR00LM014024 · NLM · YALE UNIVERSITY · PI Qingyu Chen · 2024 to 2026
$747k
Natural language processing and medical imaging analysis for multi-modality computer assisted diagnosis of ophthalmic diseasesK99LM014024 · NLM · YALE UNIVERSITY · PI CHEN, QINGYU · 2023 to 2023
$92k
NLM NIH HHS K99 LM014024NLM NIH HHS R00 LM014024
6 · The paper itself

Abstract

While genome-wide association studies (GWAS) have discovered thousands of disease-associated loci, molecular mechanisms for a considerable fraction of the loci remain to be explored. The logical next steps for post-GWAS are interpreting these genetic associations to understand disease etiology (GWAS functional studies) and translating this knowledge into clinical benefits for the patients (GWAS translational studies). Although various datasets and approaches using functional genomics have been developed to facilitate these studies, significant challenges remain due to data heterogeneity, multiplicity, and high dimensionality. To address these challenges, artificial intelligence (AI) technology has demonstrated considerable promise in decoding complex functional datasets and providing novel biological insights into GWAS findings. This perspective first describes the landmark progress driven by AI in interpreting and translating GWAS findings and then outlines specific challenges followed by actionable recommendations related to data availability, model optimization, and interpretation, as well as ethical concerns.

Indexed as

artificial intelligencefunctional genomicsgenome-wide association studiestranslational genomics

Identifiers

PMID37388909
PMCPMC10300605

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.