Evidence map›Paper›PMID 37388908›Full record

ArticleCell genomics2023

A multi-omics atlas of the human retina at single-cell resolution.

Qingnan Liang, Xuesen Cheng, Jun Wang, Leah Owen, Akbar Shakoor, John L Lillvis, Charles Zhang, Michael Farkas, Ivana K Kim, Yumei Li and 2 more

Open access · goldAbstract read
In one paragraph

Article in Cell genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 1 pooled it
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 1 synthesis or guideline pooled it, 58 citations in OpenAlex.

  1. Pooled it
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  8. Computational modelling of cell identity.The Biochemical journal · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Qingnan LiangHGSC, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Xuesen ChengHGSC, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Jun WangHGSC, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Leah OwenDepartment of Ophthalmology and Visual Sciences, University of Utah, Salt Lake City, UT 84132, USA.
Akbar ShakoorDepartment of Ophthalmology, Jacobs School of Medicine and Biomedical Engineering, University at Buffalo SUNY, Buffalo, NY 14203, USA.
John L LillvisDepartment of Ophthalmology, Jacobs School of Medicine and Biomedical Engineering, University at Buffalo SUNY, Buffalo, NY 14203, USA.
Charles ZhangDepartment of Ophthalmology, Jacobs School of Medicine and Biomedical Engineering, University at Buffalo SUNY, Buffalo, NY 14203, USA.
Michael FarkasDepartment of Ophthalmology, Jacobs School of Medicine and Biomedical Engineering, University at Buffalo SUNY, Buffalo, NY 14203, USA.
Ivana K KimRetina Service, Massachusetts Eye and Ear Infirmary, Harvard Medical School, Boston, MA 02114, USA.
Yumei LiHGSC, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Margaret DeAngelisDepartment of Ophthalmology and Visual Sciences, University of Utah, Salt Lake City, UT 84132, USA.
Rui ChenHGSC, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Baylor College of Medicine · USUniversity at Buffalo, State University of New York · USUniversity of Utah · USVA Western New York Healthcare System · USMassachusetts Eye and Ear Infirmary · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Michael M Ittmann · 2007 to 2026
$73.9M
VISION RESEARCH CENTERP30EY002520 · NEI · BAYLOR COLLEGE OF MEDICINE · PI Samuel M Wu · 1985 to 2026
$14.8M
High Throughput Genomic Sequencer at BCM Core FacilityS10OD023469 · OD · BAYLOR COLLEGE OF MEDICINE · PI CHEN, RUI · 2017 to 2017
$600k
Systems-Biology Analysis of Mechanisms Informing Preeclampsia-Mediated ROP ProtectionK08EY031800 · NEI · UNIVERSITY OF UTAH · PI OWEN, LEAH A · 2020 to 2022
$497k
BD Biosciences Special Order LSRIIS10RR024574 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI LUMPKIN, ELLEN A · 2009 to 2009
$430k
Acquisition of the Fluidigm system to accelerate functional genomics researchS10OD018033 · OD · BAYLOR COLLEGE OF MEDICINE · PI CHEN, RUI · 2014 to 2014
$396k
Acquisition of 10X Genomics Chromium Instrument to Accelerate Genomic and Single Cell Transcriptomic ResearchS10OD025240 · OD · BAYLOR COLLEGE OF MEDICINE · PI DODDAPANENI, HARSHA VARDHAN · 2018 to 2018
$125k
NCI NIH HHS P30 CA125123NCRR NIH HHS S10 RR024574NEI NIH HHS K08 EY031800NEI NIH HHS P30 EY002520NIH HHS S10 OD018033NIH HHS S10 OD023469NIH HHS S10 OD025240
6 · The paper itself

Abstract

Cell classes in the human retina are highly heterogeneous with their abundance varying by several orders of magnitude. Here, we generated and integrated a multi-omics single-cell atlas of the adult human retina, including more than 250,000 nuclei for single-nuclei RNA-seq and 137,000 nuclei for single-nuclei ATAC-seq. Cross-species comparison of the retina atlas among human, monkey, mice, and chicken revealed relatively conserved and non-conserved types. Interestingly, the overall cell heterogeneity in primate retina decreases compared with that of rodent and chicken retina. Through integrative analysis, we identified 35,000 distal

Indexed as

cross-species analysisgene regulationhuman retinasingle-cell multi-omics

Identifiers

PMID37388908
PMCPMC10300490
OpenAlexW4364376800

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.