Evidence map›Paper›PMID 37387308›Full record

ArticleMolecular microbiology2023

Discovery of a novel transcriptional regulator of sugar catabolism in archaea.

Ulrike Johnsen, Marius Ortjohann, Andreas Reinhardt, Jonathan M Turner, Caleb Stratton, Katherine R Weber, Karol M Sanchez, Julie Maupin-Furlow, Christopher Davies, Peter Schönheit

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
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  5. Article
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  9. Extremophiles in a changing world.Extremophiles : life under extreme conditions · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Ulrike JohnsenInstitut für Allgemeine Mikrobiologie, Christian-Albrechts-Universität Kiel, Kiel, Germany.
Marius OrtjohannInstitut für Allgemeine Mikrobiologie, Christian-Albrechts-Universität Kiel, Kiel, Germany.
Andreas ReinhardtInstitut für Allgemeine Mikrobiologie, Christian-Albrechts-Universität Kiel, Kiel, Germany.
Jonathan M TurnerDepartment of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, South Carolina, USA.
Caleb StrattonDepartment of Biochemistry & Molecular Biology, University of South Alabama, Mobile, Alabama, USA.
Katherine R WeberDepartment of Microbiology and Cell Science, Institute of Food and Agricultural Science, University of Florida, Gainesville, Florida, USA.
Karol M SanchezDepartment of Microbiology and Cell Science, Institute of Food and Agricultural Science, University of Florida, Gainesville, Florida, USA.
Julie Maupin-FurlowDepartment of Microbiology and Cell Science, Institute of Food and Agricultural Science, University of Florida, Gainesville, Florida, USA.ORCID 0000-0001-6105-0923
Christopher DaviesDepartment of Biochemistry & Molecular Biology, University of South Alabama, Mobile, Alabama, USA.
Peter SchönheitInstitut für Allgemeine Mikrobiologie, Christian-Albrechts-Universität Kiel, Kiel, Germany.ORCID 0000-0003-0915-8608
Christian-Albrechts-Universität zu Kiel · DEUniversity of Florida · USUniversity of South Alabama · USMedical University of South Carolina · US

Funding

Ubiquitin-like Small Archaeal Protein Modification (SAMPylation)R01GM057498 · NIGMS · UNIVERSITY OF FLORIDA · PI MAUPIN-FURLOW, JULIE A · 2000 to 2024
$4.9M
NIGMS NIH HHS R01 GM057498
6 · The paper itself

Abstract

The haloarchaeon Haloferax volcanii degrades D-glucose via the semiphosphorylative Entner-Doudoroff pathway and D-fructose via a modified Embden-Meyerhof pathway. Here, we report the identification of GfcR, a novel type of transcriptional regulator that functions as an activator of both D-glucose and D-fructose catabolism. We find that in the presence of D-glucose, GfcR activates gluconate dehydratase, glyceraldehyde-3-phosphate dehydrogenase and pyruvate kinase and also acts as activator of the phosphotransferase system and of fructose-1,6-bisphosphate aldolase, which are involved in uptake and degradation of D-fructose. In addition, glyceraldehyde-3-phosphate dehydrogenase and pyruvate kinase are activated by GfcR in the presence of D-fructose and also during growth on D-galactose and glycerol. Electrophoretic mobility shift assays indicate that GfcR binds directly to promoters of regulated genes. Specific intermediates of the degradation pathways of the three hexoses and of glycerol were identified as inducer molecules of GfcR. GfcR is composed of a phosphoribosyltransferase (PRT) domain with an N-terminal helix-turn-helix motif and thus shows homology to PurR of Gram-positive bacteria that is involved in the transcriptional regulation of nucleotide biosynthesis. We propose that GfcR of H. volcanii evolved from a PRT-like enzyme to attain a function as a transcriptional regulator of central sugar catabolic pathways in archaea.

Indexed as

ArchaeaPyruvate KinaseFructoseGlucoseGlyceraldehyde-3-Phosphate DehydrogenasesGlycerolFructoseGlucoseGlyceraldehyde-3-Phosphate DehydrogenasesGlycerolPyruvate KinasearchaeaD-glucose and D-fructose catabolismelectrophoretic mobility shift assay (EMSA)Haloferax volcaniiphosphoribosyltransferase (PRT) protein familytranscriptional regulation

Identifiers

PMID37387308
PMCPMC10838023
OpenAlexW4382632559

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.