Evidence map›Paper›PMID 37386258›Full record

ReviewNature aging2023

Considerations for reproducible omics in aging research.

Param Priya Singh, Bérénice A Benayoun

Abstract readReview
In one paragraph

Review in Nature aging, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Review
  4. Co-expression network multivariate regression.Briefings in bioinformatics · 2026
    Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Germ cells and the aging niche: a systems approach to reproductive longevity.Journal of assisted reproduction and genetics · 2025
    Review
  10. Article
  11. Article
  12. Multiomics of Aging and Aging-Related Diseases.International journal of molecular sciences · 2024
    Review
  13. Article
  14. Article
  15. Review
  16. Genetic context modulates aging and degeneration in the murine retina.bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Param Priya SinghDepartment of Anatomy, University of California, San Francisco, San Francisco, CA, USA. param.singh@ucsf.edu.ORCID http://orcid.org/0000-0002-3325-8767
Bérénice A BenayounLeonard Davis School of Gerontology, University of Southern California, Los Angeles, CA, USA. berenice.benayoun@usc.edu.ORCID http://orcid.org/0000-0002-7401-4777

Funding

Understanding the regulation and impact of transposable elements in Vertebrate health and diseaseR35GM142395 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BENAYOUN, BERENICE ANATH · 2021 to 2025
$2.2M
Deciphering hormonal regulation of neutrophil biologyR01AG076433 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BENAYOUN, BERENICE ANATH · 2022 to 2025
$2.1M
NIA NIH HHS R01 AG076433NIGMS NIH HHS R35 GM142395
6 · The paper itself

Abstract

Technical advancements over the past two decades have enabled the measurement of the panoply of molecules of cells and tissues including transcriptomes, epigenomes, metabolomes and proteomes at unprecedented resolution. Unbiased profiling of these molecular landscapes in the context of aging can reveal important details about mechanisms underlying age-related functional decline and age-related diseases. However, the high-throughput nature of these experiments creates unique analytical and design demands for robustness and reproducibility. In addition, 'omic' experiments are generally onerous, making it crucial to effectively design them to eliminate as many spurious sources of variation as possible as well as account for any biological or technical parameter that may influence such measures. In this Perspective, we provide general guidelines on best practices in the design and analysis of omic experiments in aging research from experimental design to data analysis and considerations for long-term reproducibility and validation of such studies.

Indexed as

GeroscienceTranscriptomeMetabolomeProteomeReproducibility of ResultsProteome

Identifiers

PMID37386258
PMCPMC10527412

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.