Evidence map›Paper›PMID 37386135›Full record

ArticleNature chemical biology2023

An anti-biofilm cyclic peptide targets a secreted aminopeptidase from P. aeruginosa.

Christopher John Harding, Marcus Bischoff, Megan Bergkessel, Clarissa Melo Czekster

Open access · hybridAbstract read
In one paragraph

Article in Nature chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Structural determinants of protein kinase A essential for CFTR channel activation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. The Secreted Aminopeptidase ofInternational journal of molecular sciences · 2024
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Christopher John HardingBiomedical Sciences Research Complex, School of Biology, University of St Andrews, St Andrews, UK.ORCID 0000-0003-0388-6460
Marcus BischoffBiomedical Sciences Research Complex, School of Biology, University of St Andrews, St Andrews, UK.ORCID 0000-0002-0737-6321
Megan BergkesselSchool of Life Sciences, University of Dundee, Dundee, UK.ORCID 0000-0002-4530-1224
Clarissa Melo CzeksterBiomedical Sciences Research Complex, School of Biology, University of St Andrews, St Andrews, UK. cmc27@st-andrews.ac.uk.ORCID 0000-0002-7163-4057
University of St Andrews · GBUniversity of Dundee · GB

Funding

Medical Research CouncilWellcome Trust
6 · The paper itself

Abstract

Pseudomonas aeruginosa is an opportunistic pathogen that causes serious illness, especially in immunocompromised individuals. P. aeruginosa forms biofilms that contribute to growth and persistence in a wide range of environments. Here we investigated the aminopeptidase, P. aeruginosa aminopeptidase (PaAP) from P. aeruginosa, which is highly abundant in the biofilm matrix. PaAP is associated with biofilm development and contributes to nutrient recycling. We confirmed that post-translational processing was required for activation and PaAP is a promiscuous aminopeptidase acting on unstructured regions of peptides and proteins. Crystal structures of wild-type enzymes and variants revealed the mechanism of autoinhibition, whereby the C-terminal propeptide locks the protease-associated domain and the catalytic peptidase domain into a self-inhibited conformation. Inspired by this, we designed a highly potent small cyclic-peptide inhibitor that recapitulates the deleterious phenotype observed with a PaAP deletion variant in biofilm assays and present a path toward targeting secreted proteins in a biofilm context.

Indexed as

AminopeptidasesPseudomonas aeruginosaBacterial ProteinsBiofilmsPeptide HydrolasesPeptides, CyclicAminopeptidasesBacterial ProteinsPeptide HydrolasesPeptides, Cyclic

Identifiers

PMID37386135
PMCPMC10449631
OpenAlexW4382631326

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.