Evidence map›Paper›PMID 37384667›Full record

ArticlePloS one2023

SMOTE-CD: SMOTE for compositional data.

Teo Nguyen, Kerrie Mengersen, Damien Sous, Benoit Liquet

Abstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Teo NguyenLaboratoire de Mathématiques et de leurs Applications, Université de Pau et des Pays de l'Adour, E2S UPPA, CNRS, Anglet, France.ORCID 0000-0001-5515-9463
Kerrie MengersenLaboratoire de Mathématiques et de leurs Applications, Université de Pau et des Pays de l'Adour, E2S UPPA, CNRS, Anglet, France.
Damien SousLaboratoire des Sciences Pour l'ingénieur Appliquées à la Mécanique et au Génie Électrique, Université de Pau et des Pays de l'Adour, E2S UPPA, Anglet, France.
Benoit LiquetLaboratoire de Mathématiques et de leurs Applications, Université de Pau et des Pays de l'Adour, E2S UPPA, CNRS, Anglet, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Compositional data are a special kind of data, represented as a proportion carrying relative information. Although this type of data is widely spread, no solution exists to deal with the cases where the classes are not well balanced. After describing compositional data imbalance, this paper proposes an adaptation of the original Synthetic Minority Oversampling TEchnique (SMOTE) to deal with compositional data imbalance. The new approach, called SMOTE for Compositional Data (SMOTE-CD), generates synthetic examples by computing a linear combination of selected existing data points, using compositional data operations. The performance of the SMOTE-CD is tested with three different regressors (Gradient Boosting tree, Neural Networks, Dirichlet regressor) applied to two real datasets and to synthetic generated data, and the performance is evaluated using accuracy, cross-entropy, F1-score, R2 score and RMSE. The results show improvements across all metrics, but the impact of oversampling on performance varies depending on the model and the data. In some cases, oversampling may lead to a decrease in performance for the majority class. However, for the real data, the best performance across all models is achieved when oversampling is used. Notably, the F1-score is consistently increased with oversampling. Unlike the original technique, the performance is not improved when combining oversampling of the minority classes and undersampling of the majority class. The Python package smote-cd implements the method and is available online.

Indexed as

AcclimatizationEntropyMinority GroupsNeural Networks, Computer

Identifiers

PMID37384667
PMCPMC10309641

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.