Evidence map›Paper›PMID 37382683›Full record

ArticleJournal of molecular modeling2023

The validation of predictive potential via the system of self-consistent models: the simulation of blood-brain barrier permeation of organic compounds.

Alla P Toropova, Andrey A Toropov, Alessandra Roncaglioni, Emilio Benfenati, Danuta Leszczynska, Jerzy Leszczynski

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Article in Journal of molecular modeling, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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5 · Who and what money

Authors and funding

6 authors.

Alla P ToropovaLaboratory of Environmental Chemistry and Toxicology, Department of Environmental Health Science, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156, Milano, Italy. alla.toropova@marionegri.it.ORCID https://orcid.org/0000-0002-4194-9963
Andrey A ToropovLaboratory of Environmental Chemistry and Toxicology, Department of Environmental Health Science, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156, Milano, Italy.
Alessandra RoncaglioniLaboratory of Environmental Chemistry and Toxicology, Department of Environmental Health Science, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156, Milano, Italy.
Emilio BenfenatiLaboratory of Environmental Chemistry and Toxicology, Department of Environmental Health Science, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156, Milano, Italy.
Danuta LeszczynskaInterdisciplinary Nanotoxicity Center, Department of Civil and Environmental Engineering, Jackson State University, 1325 Lynch Street, Jackson, MS, 39217-0510, USA.
Jerzy LeszczynskiInterdisciplinary Nanotoxicity Center, Department of Chemistry, Physics and Atmospheric Sciences, Jackson, MS, 39217, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

contextTo apply the quantitative relationships "structure-endpoint" approach, the reliability of prediction is necessary but sometimes challenging to achieve. In this work, an attempt is made to accomplish the reliability of forecasts by creating a set of random partitions of data into training and validation sets, followed by constructing random models. A system of random models for a helpful approach should be self-consistent, giving a similar or at least comparable statistical quality of the predictions for models obtained using different splits of available data into training and validation sets.

methodThe carried out computer experiments aimed at obtaining blood-brain barrier permeation models showed that, in principle, can be used such an approach (the Monte Carlo optimization of the correlation weights for different molecular features) for the above purpose taking advantage of specific algorithms to optimize the modelling steps with applying of new statistical criteria such as the index of ideality of correlation (IIC) and the correlation intensity index (CII). The results so obtained are good and better than what was reported previously. The suggested approach to validation of models is non-identic to traditionally applied manners of the checking up models. The concept of validation can be used for arbitrary models (not only for models of the blood-brain barrier).

Indexed as

Blood-Brain BarrierOrganic ChemicalsAlgorithmsComputer SimulationReproducibility of ResultsOrganic ChemicalsBlood–brain barrier permeationCORAL softwareMathematical modellingMonte Carlo methodQSARSystem of self-consistent models

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.